Dan Kapner

survey AllenSDK for mtrain reliance: * `AllenSDK/allensdk/brain_observatory/behavior/session_apis/data_io/behavior_ophys_lims_api.py` credentials imported, it doesn't seem to be used (in this module). * `AllenSDK/allensdk/brain_observatory/behavior/session_apis/data_io/behavior_lims_api.py ` credentials imported, it doesn't seem to be used (in...

Framework for LIMS team request: - [ ] add column named `stimulus_name` to `behavior_sessions` table. type: TEXT, allow nulls. NOTE: do we like `stimulus_name` ? aliases are `session_type` (behavior cache...

deeper link for that explanation: https://github.com/AllenInstitute/AllenSDK/blob/0178688ccdfb4d3b6c311cc8879126f7d64e90a1/allensdk/brain_observatory/behavior/behavior_project_cache/tables/project_table.py#L32-L35

I think the cache is keeping track of things in a local file, and it wasn't written in such a way that it can handle multiprocess collisions on r/w of...

yes, "don't do that" :) no, we have not made a local copy of the downloaded cache

For example: https://github.com/AllenInstitute/AllenSDK/blob/ea8cdc760210bec5ad01a3bd8fd586b6e2228080/allensdk/brain_observatory/behavior/session_apis/data_io/behavior_ophys_nwb_api.py#L272-L275

Iryna reports a potential variation on this: https://visualbehavior.slack.com/archives/C011J60BN94/p1627601956042100

@dougollerenshaw event detection is only performed on vaiid ROIs, there are not event detection traces for invalid ROIs (except where Iryna pointed out another issue, which we'll address elsewhere). given...

>Yeah ideally event detection would be run on the invalid ROIs as well running event_detection on invalid ROIs would be a big reprocessing effort, and I don't think we have...

got around my immediate problem by switching from NumpyArray to List. The issue stands, though.