Denis Ibaev

This patch fixes tests for support of MSWin32 platform.

If path contains backslashes (e.g. `C:\Users` in Windows) then replacement `s|$root_dir_re/lib/MyApp|$root_dir/lib/$app_name|` failed with message like `Unrecognized escape \U passed through in regex`.

This patch has fix for failed test report http://www.cpantesters.org/cpan/report/e18e6c74-d160-11e4-95d5-ca4a55c8bd36 `Class::MOP::load_class` is deprecated now, but it used in old versions of Mason. Changes: > Moose 2.1100 2013-09-07 (TRIAL RELEASE) > -...

The [`t/Eponine.t`](https://github.com/bioperl/bioperl-run/blob/master/t/Eponine.t) test failed if Java not installed. There is an error in [line 20](https://github.com/bioperl/bioperl-run/blob/master/t/Eponine.t#L20): open(my $PIPE,"java -version 2>&1 |") || exit; If Java not installed the test just exits...