How to generate .seq files

[ndfriedman]

Hi there, I am very interested in running bicseq but am struggling to parse the documentation to successfully complete the first step (generating .seq files). I have tried using the modified samtools and sh scripts within the docker container, neither of which worked. Could you please direct me to the explicit steps I should use to complete the first step and generate .seq files? I am having a hard time figuring out which branch on github is functional for my purposes. Thanks so much!