Parsing: fix Stockholm for Clustal Omega output

[timholy]

Clustal Omega writes files like this:

  # STOCKHOLM 1.0

  #=GS    Q8BX79|reviewed|Probable DE    G-protein coupled receptor 21|taxID:10090
    ...
  Q8BX79|reviewed|Probable     -----MNSTWDGN---------QSSHPFCLLAL-------GYLETVRFCL
    ...

That "|reviewed|Probable" ended up getting slurped into the sequence. This commit searches for the final space in the sequence line and only considers everything after that to be the sequence.

[timholy]

CC @tmcgrath325

[diegozea]

Hi @timholy!

Thanks for pointing this out! I think that the real issue is that I tried to use the pipe in the regex of the following line to mean spaces OR tabs, but since it is inside the squared brackets, it is considered as a literal pipe causing the bug:

https://github.com/diegozea/MIToS.jl/blob/717d6f9306ca743ed66f0f94c023fcbeb47c00d4/src/Utils/GeneralUtils.jl#L39

So, the more straightforward solution should be to delete the pipe in that regex.

Cheers

[timholy]

Good suggestion, thanks!

[diegozea]

Thanks again for finding and solving this parser's bugging behavior.