Some errors while startup.sh

[WuuuZD]

Hi, Thanks for your help! I have tried a lot of times run ./startup.sh, and I have some errors here. on mac os + maven 2.2.1 + java 1.8.0_144 when I run ./startup.sh, it stops here: I don't why, is it caused by macos?

[MichaelRoeder]

Thanks for using GERBIL :smiley:

On my systems, there follows a line with something like:

INFO: Starting ProtocolHandler ["http-bio-1234"]

However, please note that the start.sh script simply starts a Tomcat Server and the console is attached to the log of the tomcat. So it will not show a prompt or something like that, until you stop the server with ctrl+c (or whatever you use on macos :wink: ). So if nothing is happening, it is possible that the tomcat server is already running and just waits for a user. You could try to open http://localhost:1234/gerbil/ and check whether you can see the UI.

[WuuuZD]

Thanks for your help! And I have some other problem The first : when I try the system on github :https://github.com/dalab/end2end_neural_el it shows can you help my about this?

The second how should I use gerbil, when I use gerbil on a linux server without the UI? Thanks a lot for your help! 😉

[TortugaAttack]

Hey, As i have no mac os on my hands right now i am not sure if i can reproduce the start.sh error but i will check what it might be.

I will test the system locally and check what happens and will let you know whats wrong.

Do you mean with using gerbil without the UI on how to start a experiment and receive its results?

[TortugaAttack]

You do not happen to have an online demo of the system? Would spare me a lot of time :)

[WuuuZD]

@TortugaAttack Thanks for your help！ the mac os can run start.sh but it didn't show INFO: Starting ProtocolHandler ["http-bio-1234"]
Fortunately mac os can open http://localhost:1234/gerbil/ and gerbil can be used. Yes, could I use gerbil without the UI on how to start a experiment and receive its results? I ‘m sorry that I havn't modify the system so there isn’t a online demo😢

Thanks for all your help! It's very kind of you to help my for these troubles😄

[TortugaAttack]

So i debugged it and the answer is parsed correctly but do not contain any markings which resolves into the 0 results with 0 errors. REST services: http://localhost:1234/gerbil/exexcute?experimentData={expData} whereas expData is a JSON object which looks like the following:

{
    "type": "D2KB",
    "matching": "STRONG_ANNOTATION_MATCH",
    "annotator": [
         "NIFWS_try1(http://localhost:1235/gerbil-spotWrapNifWS4Test/myalgorithm)"
    ],
    "dataset": [
        "ACE2004", 
        "DBpediaSpotlight"
    ]
}

http://localhost:1234/gerbil/experiment?id={ID} whereas {ID} is your experiment ID

if this does not work please let me know :)

[WuuuZD]

Thanks for your help！ But i still have the problem as following Could you tell me which function of end2endel did you use， el or ed ? Thanks a lot!

[TortugaAttack]

EL but i accidentally shut down the EL server. Now it have markings, will look further into why its got 0 as results . There were some correct markings as far as i can tell.

[TortugaAttack]

I think it is rather strange that the experiments finished within 2 minutes in your screenshots, where as it takes up to a few hours for me (still not finished) The EL python command uses 65% of my memory (out of 16GB RAM) without doing anything, is that normal?

[WuuuZD]

Thanks~ Which datasets did you use, and which of them has correct markings? Could you show me your markings? My markings are all 0 😢 I used mac os where python3 used 10.65GB(out of 16GB) same as yours.

[WuuuZD]