Daniel Himmelstein

@WolfgangFahl can you update your original comment to use commit-hash versioned links (links are currently broken). A way to get results as a list of dicts, where values used Python...

> The most reliable way to do this would be to add support for a `preprint_citation` and `journal_citation` in the manuscript metadata. I like this approach. I think it makes...

> Are these "citations" or some more general type of cross-reference? I was thinking regular manubot citations, possibly with access to manual reference metadata.

Noting that the DOCX is getting saved to the `output` branch, so if you are okay with a URL like https://github.com/habi/EAWAG-manuscript/raw/output/manuscript.docx that might be all you need.

I [installed](https://gitlab.pagedmedia.org/tools/pagedjs-cli/issues/34#note_2375) pagedjs-cli 0.1.1 from npm: ```bash pagedjs-cli \ --page-size=A4 \ --inputs https://manubot.github.io/rootstock/v/97b294802ffcd39071b6e5b8ab59f60faf4be118/ \ --output output/pagedjs.pdf ``` Output: ``` ✔ Loaded ✔ Rendering 10 pages took 1220.1599999971222 milliseconds. ✔ Generated...

> Here's something I hadn't considered until now: writing our own pdf conversion I'd strongly prefer if we could piggy back on an existing project, as I don't think we...

Noting that the source code for pagedjs has been migrated from `gitlab.pagedmedia.org` to `gitlab.coko.foundation`, so the issue links above are broken. Here are updated links for these issues (although the...

> do you have an account on gitlab.coko.foundation https://gitlab.coko.foundation/dhimmel

This is due to the Hypothesis integration from https://github.com/greenelab/manubot-rootstock/issues/90 / https://github.com/greenelab/manubot-rootstock/issues/95. I agree it'd be nice to have Hypothesis popovers and highlighting be more optional. For example, they could be...

@vincerubinetti: would it be hard for us to create a little button or something that enables/disables hypothesis altogether?