desmodus1984

Hi, I wanted to ask you something. Do you know a way to eliminate the zero-depth regions? For me it doesn't make any sense them, they are false-positives, with like...

Also, I tried to correct my mtDNA reads, which make just 2.7Mb, and I ran this code: `CONSENT-correct --in Ju760.3x.q20.fq --out Ju760.3x.corr.fasta --type ONT -j 12 ` And I got...

Hi @travishathaway Thanks for the suggestion. It did work wonderfully, and it should be added to the conda documentation because now conda is significantly faster than before. I wanted to...

Hi @travishathaway I used the code that you gave me and sadly I didn't eliminate that much trash. I got the message "Will remove 1 index cache(s)." and I eliminated...

Hi, I am trying to update a package, since I have an old version, I use `conda update samtools (from v.1.60 to v.1.20) I get the message: `Channels: - conda-forge...

Yes. I did install it in the conda environment and I also tried loading the HPC module

Hi, I had the same error: File "/home/juaguila/miniconda3/envs/ragtag/lib/python3.6/site-packages/pysam/__init__.py", line 71, in __call__ (retval, "\n".join(stderr))) pysam.SamtoolsError: 'csamtools returned with error 1: ' Everything worked fine until it tried reading a file...

The tidk command is already there: `tidk plot -o 176-TR -h 120 -w 800 -t Scaff_telomeric_repeat_windows.tsv ` Before that is basic conda activation for running: ``` # Init conda source...

Hi, For some reason now it partially worked, but while I am on the terminal. I ran this: ``` snikt.R --notrim XDOVE_20250919_R84050_PL23160-002_1-1-D01_Twist_16_UDI_4_D01_F-16_UDI_4_D01_R.hifi_reads.fastq.gz ``` and it worked, but it used only...

Hi @huangnengCSU Hope you are doing well after Thanksgiving. I wanted to ask you a question. Does compleasm properly detects in-frame stop codons? I want to do comparative genomics of...