PHANOTATE icon indicating copy to clipboard operation
PHANOTATE copied to clipboard

Include Aragorn for tRNA masking in addition to tRNAscan-SE

Open ilyavs opened this issue 1 year ago • 5 comments

Hi, I recently annotated phages with phanotate in an environment where tRNAscan-SE was installed. Therefore, tRNA masking did use tRNAscan-SE. However, in my final NCBI submission I also added tRNA predictions from Aragorn and apparently had a couple of tRNAs overlapping a CDS. Could you please facilitate Aragorn for tRNA masking as well on systems where it is installed? For now, going to drop the CDS manually. Thank you, Ilya.

ilyavs avatar Mar 25 '23 18:03 ilyavs