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Published 20 hours ago • verified publisher icon dentearl

update to python3?

Open ekg opened this issue 4 years ago • 3 comments

Would it be possible to move to python3? What tools require python2.7?

ekg avatar Apr 10 '20 09:04 ekg

Hi Erik,

These tools haven't been maintained in years. If VG needs them, probably best to fork into a CGL-owned repo and go from there.

diekhans avatar Apr 10 '20 13:04 diekhans

MAF is the only creature in the uncanny valley between genome graphs and MSAs.

Are there really just a handful of people using MAF?

On Fri, Apr 10, 2020, 15:50 Mark Diekhans [email protected] wrote:

Hi Erik,

These tools haven't been maintained in years. If VG needs them, probably best to fork into a CGL-owned repo and go from there.

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ekg avatar Apr 10 '20 15:04 ekg

People build UCSC browser hubs and some tools, like PhyloCSF, use it.

so I don't know how many, but more than either genome graphs or HAL ;-)

Erik Garrison [email protected] writes:

MAF is the only creature in the uncanny valley between genome graphs and MSAs.

Are there really just a handful of people using MAF?

diekhans avatar Apr 10 '20 15:04 diekhans