Dennis Hazelett

icon indicating an email [email protected]

icon company Cedars-Sinai Medical Center icon location Los Angeles icon location Professor, Computational Biomedicine, Cedars-Sinai Medical Center

Results 13 comments of Dennis Hazelett

Find Broken Motifs for a combination of SNPs

This can be done with custom variants, e.g.: ``` chr1 12345 12349 chr1:12345:12349:ACTTG:AGTCG ```

Strand information

If you change the strand you change the meaning of the bed file completely. For example if you indicate in your SNP label that the values are ":T:G", motifbreakR understands...

Strand information

use MotifDb package; see [query function](http://rpackages.ianhowson.com/bioc/MotifDb/man/query.html)