Dennis Hazelett

This is not a bug. MotifbreakR can't render the plot if there are too many results.

can you provide some info, what platform and version of R/Bioconductor etc

this issue has been resolved on another thread, please see https://github.com/Simon-Coetzee/motifBreakR/issues/53#issuecomment-2135865036

Your variant has more than one alternate allele. You can specify which one you want to see in `plotMB()` with argument `altAllele="C"` etc

I'm unable to replicate this error. Can you please paste the code that produced it and your `sessionInfo()`?

I am able to reproduce the error; the problem is there are too many results. I get 94 `effect == "strong"` motifbreakRs, which can't be rendered by `plotMB()`. Try more...

One more thing, if there is a specific motif that you are interested in, or any other criteria, there is nothing stopping you from filtering your result set to the...

Hi the second error is not caused by motifbreakR

How to read these error messages: 1) the SNPs are not in the SNPlocs package you specified. You have the option of either finding another (genome compatible) package that has...

Also, note that older versions of MotifBreakR will filter indels. If you want indels included in your analysis, make sure you're using the latest version of MotifBreakR