Denise Lavezzari issues

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                                            Denise Lavezzari

genome .alt file

Hi! I want to align my data on the version of hg38_p13 ( https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/p13/ ) and I need to create the alternative file. How can I do that? Thanks

BWA mem parameters

Hi everyone! I have a question about BWA-mem parameters. I know that is usually better to use default ones, but I want to know if someone try to change one...

Assertion `a.cigar != NULL' failed.

Hi! I'm trying to run BWA with the command: ` /opt/bwa-mem2/bwa-mem2 mem -t 3 -o alignment.bam -O BAM /opt/references/SARS-CoV2/SARS-CoV-2.fasta ../trimmed.R1.fastq.gz ../trimmed.R2.fastq.gz` but it returns the following error: [0000] 3. Calling...