msms
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delt0r
A coalsecent simulator with selection
Hello, I need to increase the precision of floating values corresponding to the positions of the simulated SNPs. For that purpose, I see which line I can modify, it doesn't...
Hi! I would expect the following pieces of code to be equivalent: A: -SI 0.01 1 0.001 -Sc 0 1 400 400 0 B: -SI 0.01 1 0.001 -SAA 400...
An instantaneous bottleneck of size num_indv at time t, which then returns to constant size of size*N0 at time t.
This is not a “bug” per se, but I have an issue with the way that msms rounds the segregating site positions to the nearest 1e-5. i.e. // segsites: 2...
Currently, if a system only has Python 3 (and has `python3` aliased to `python` as well), `msms` can't run because the print statement is `print ____` instead of `print(___)`. I...
The second example (Adding selection) from the [quickstart](https://www.mabs.at/ewing/msms/quickStart.shtml) web page fails on my machine. The command in question is `msms -N 10000 -ms 10 1000 -t 1 -SAA 100 -Sa...
How difficult would it be to add an event that instantaneously coalesces all lines to a max number?
I am looking for some clarification about the manual. If you introduce a new mutation with -SI at a frequency above 1 copy (say, 2), would this result in an...
Occasionally, Smark indicates that the beneficial allele is not present in the sample (only zeros) when oTrace actually shows that the allele has fixed in the population. F.e. msms -ms...
