Nicole Deflaux

Results 16 comments of Nicole Deflaux

@davidadamsphd If this is reusable code for both dataflow-java and gatk-tools-java, consider placing it in utils-java instead. I'm not familiar with the details though. @iliat What do you think?

sounds great! Its always joyful to delete obsolete or redundant code :-)

In general, it would be better to have specific command line options for the variant set and its associated references on the case and control sides of the comparison. The...

This is a great feature request and is something we should do soon. For reads, its the referenceSetId which can then be used to look up the [reference set](https://cloud.google.com/genomics/v1beta2/reference-sets) ```...

Sounds great @jennybc ! Watching that repo now.