pyGenomeTracks
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deeptools
python module to plot beautiful and highly customizable genome browser tracks
Hi, I installed pyGenomeTracks using conda and mamba: ``` conda create -n pygenometracks -c bioconda -c conda-forge mamba python=3.7 conda activate pygenometracks mamba install -c defaults -c bioconda -c conda-forge...
Hi ! i'm using hicexplorer and i'm trying to plot HiC data with genes but something definitly wrong.. i'm using this file hic_track.ini: [x-axis] where = top [hic matrix] file...
Hi, I was wondering if I can plot the TADs in circos format in pyGenomeTracks, similar to the attached screenshot? I'm using the following version of hicExplorer. --Python3/3.9.0 --hicexplorer/3.7.1/ Thanks...
add CNV
Hi ! thanks for your work, i would like to know if it's possible to add CNV/SNV on the plot? thanks :) i'm using: python 3.8 pyGenomeTracks 3.7
**Welcome to the pyGenomeTracks GitHub repository! Before opening the issue please check that the following requirements are met :** - [ x ] Search whether this issue (or a similar...
Dear Developers, First thanks for this amazing tools for data visualization. My question is how to make some breaks on x-axis, like the picture below (from R package trackViewer): ...
[Feature Request]: call pyGenomeTracks from python without a .ini file (or document this ability)
Hello @fidelram and others, As always, many thanks for building this package and making it open source. I'd love to call pyGenomeTracks from a python script without a .ini file....
Add the vlines and vhighlight. (The vhighlight has been forgotten to the release text of 3.7).
