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can plotProfile --clusterUsingSamples do multiple clusters?
I have sample groups that I'd like to cluster. If my samples are 1-10 and every 2 are the same species/tissue/whatever, can I do something like
--clusterUsingSamples (1 2) (3 4) (5 6) (7 8) (9 10) ?
Or do I do --clusterUsingSamples 1 2 --clusterUsingSamples 3 4 --clusterUsingSamples 56 --clusterUsingSamples 7 8 --clusterUsingSamples 9 10 ?
Or do I have to run separate plotProfile commands?
Thanks! Sara