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Published 20 hours ago • verified publisher icon deeptools

Possible to calculate AUC and/or statistics for computeMatrix/plotProfile results?

Open bhanratt opened this issue 2 years ago • 2 comments

I have some data from computeMatrix which I have drawn plots with plotProfile. Is there a way to compute the area under the curve of the line drawn by plotProfile and/or some other way to statistically compare two separate mat.gz results?

bhanratt avatar Feb 24 '22 22:02 bhanratt

Sounds like you're looking for deepStats: https://github.com/gtrichard/deepStats

dpryan79 avatar Feb 25 '22 07:02 dpryan79

@dpryan79 Thanks for the link. I did run it but it doesn't seem to have a function for AUC. Any idea how to compute the AUC for the curves produced by plotProfile?

bhanratt avatar Mar 04 '22 21:03 bhanratt