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Published 20 hours ago • verified publisher icon deeptools

How to use hicConvertFormat to get HicPro format file

Open DRosen1996 opened this issue 3 years ago • 2 comments

I try to use hicConvertFormat to get HicPro format file but something wrong

hicConvertFormat --matrices palv_CK_sort.txt.polished.hic.500k_500000.h5 --outFileName palv_CK_sort.txt.polished.hic.500k_500000.hicpro --inputFormat h5 --outputFormat hicpro

image

I think I'm using it wrong, but I can't find an example

DRosen1996 avatar Feb 22 '22 11:02 DRosen1996

You are missing the BED file!

joachimwolff avatar Feb 28 '22 17:02 joachimwolff

But shouldn't the BED file be the result file of HiC-pro?like this image

DRosen1996 avatar Mar 15 '22 08:03 DRosen1996