deepmodeling
Compilation error with v3.7.0
Describe the bug
When compiling v3.7.1, an error occurred regarding PEXSI, so in order to identify the issue, we attempted to compile v3.7.0 and v3.6.5. V3.6.5 can compile normally, but v3.7.0 has the following errors:
[ 72%] Building CXX object source/module_relax/CMakeFiles/relax.dir/relax_new/line_search.cpp.o
[ 72%] Building CXX object source/module_relax/CMakeFiles/relax.dir/relax_old/relax_old.cpp.o
[ 72%] Building CXX object source/module_esolver/CMakeFiles/esolver.dir/esolver_lj.cpp.o
[ 72%] Building CXX object source/module_hamilt_lcao/module_gint/CMakeFiles/gint.dir/gint_k_sparse1.cpp.o
/share/home/wwu/abacus-develop/source/module_hamilt_lcao/hamilt_lcaodft/fedm_gamma.cpp:55:52: error: no member named 'pexsi_edm' in 'elecstate::DensityMatrix<double, double>'; did you mean 'pexsi_EDM'?
edm.set_DMK_pointer(ik, pes->get_DM()->pexsi_edm[ik]);
^~~~~~~~~
pexsi_EDM
/share/home/wwu/abacus-develop/source/module_elecstate/module_dm/density_matrix.h:217:22: note: 'pexsi_EDM' declared here
std::vector<TK*> pexsi_EDM;
^
1 error generated.
gmake[2]: *** [source/module_hamilt_lcao/hamilt_lcaodft/CMakeFiles/hamilt_lcao.dir/fedm_gamma.cpp.o] Error 1
gmake[2]: *** Waiting for unfinished jobs....
[ 73%] Building CXX object source/module_relax/CMakeFiles/relax.dir/relax_old/bfgs_basic.cpp.o
gmake[1]: *** [source/module_hamilt_lcao/hamilt_lcaodft/CMakeFiles/hamilt_lcao.dir/all] Error 2
gmake[1]: *** Waiting for unfinished jobs....
[ 74%] Building CXX object source/module_esolver/CMakeFiles/esolver.dir/esolver_dp.cpp.o
[ 74%] Building CXX object source/module_esolver/CMakeFiles/esolver.dir/esolver_of_interface.cpp.o
[ 74%] Building CXX object source/module_esolver/CMakeFiles/esolver.dir/esolver_of.cpp.o
[ 74%] Building CXX object source/module_esolver/CMakeFiles/esolver.dir/esolver_of_tool.cpp.o
Expected behavior
No response
To Reproduce
git clone https://github.com/deepmodeling/abacus-develop.git
git checkout v3.7.0
export PREFIX=${HOME}/abacus
cmake -B build \
-DCMAKE_INSTALL_PREFIX=${PREFIX} \
-DCMAKE_CXX_COMPILER=icpx \
-DMPI_CXX_COMPILER=mpiicpc \
-DELPA_DIR=${PREFIX}/elpa \
-DLibxc_DIR=${PREFIX}/libxc \
-DCEREAL_INCLUDE_DIR=${PREFIX}/cereal/include \
-DENABLE_LIBRI=ON \
-DENABLE_PEXSI=ON \
-DPEXSI_DIR=${PREFIX}/pexsi/pexsi_200 \
-DParMETIS_DIR=${PREFIX}/pexsi/parmetis \
-DSuperLU_DIST_DIR=${PREFIX}/pexsi/superlu_dist
The above configuration can be executed normally, but the error is caused by the following command:
cmake --build build
Environment
gcc: 12.2.0 cmake: 3.26 intel oneapi: c++/mkl-2023.10 mpi-2021
Additional Context
No response
Task list for Issue attackers (only for developers)
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@scott-5 Would you try installling ABACUS on the latest branch? Sorry for missing this feedback.
Yes. I tried to install the latest branch, but there are still errors. It is still related to PEXSI:
[ 36%] Building CXX object source/module_base/module_container/CMakeFiles/container.dir/ATen/kernels/lapack.cpp.o
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:193:5: error: expected expression
else if (this->method == "pexsi")
^
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:132:23: error: no viable conversion from 'DiagoPexsi<double> *' to 'DiagoPexsi<double>'
DiagoPexsi<T> tem = dynamic_cast<DiagoPexsi<T>*>(this->pdiagh);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...(note level info)
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:133:17: error: invalid operands to binary expression ('DiagoPexsi<double>' and 'std::nullptr_t')
if (tem == nullptr)
~~~ ^ ~~~~~~~
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:137:30: error: member reference type 'DiagoPexsi<double>' is not a pointer; did you mean to use '.'?
pes->f_en.eband = tem->totalFreeEnergy;
~~~^~
.
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:139:26: error: member reference type 'DiagoPexsi<double>' is not a pointer; did you mean to use '.'?
_pes->dmToRho(tem->DM, tem->EDM);
~~~^~
.
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:139:35: error: member reference type 'DiagoPexsi<double>' is not a pointer; did you mean to use '.'?
_pes->dmToRho(tem->DM, tem->EDM);
~~~^~
.
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:132:23: error: no viable conversion from 'DiagoPexsi<complex<double>> *' to 'DiagoPexsi<complex<double>>'
DiagoPexsi<T> tem = dynamic_cast<DiagoPexsi<T>*>(this->pdiagh);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...(note level info)
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:133:17: error: invalid operands to binary expression ('DiagoPexsi<complex<double>>' and 'std::nullptr_t')
if (tem == nullptr)
~~~ ^ ~~~~~~~
...(note level info)
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:137:30: error: member reference type 'DiagoPexsi<complex<double>>' is not a pointer; did you mean to use '.'?
pes->f_en.eband = tem->totalFreeEnergy;
~~~^~
.
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:139:26: error: member reference type 'DiagoPexsi<complex<double>>' is not a pointer; did you mean to use '.'?
_pes->dmToRho(tem->DM, tem->EDM);
~~~^~
.
/share/home/wwu/abacus-develop/source/module_hsolver/hsolver_lcao.cpp:139:35: error: member reference type 'DiagoPexsi<complex<double>>' is not a pointer; did you mean to use '.'?
_pes->dmToRho(tem->DM, tem->EDM);
~~~^~
@caic99
This may be caused by recent refactors in hamiltonian solvers. For now you may use this repository: https://github.com/Flying-dragon-boxing/abacus-develop We will fix this soon
@Flying-dragon-boxing Now I can successfully compile latest branch. I have another question, that is before this fix, how does it pass compilation tests? Why does compilation fail on my machine? Is this because the compilation test environment is different from that of my machine?
@Flying-dragon-boxing Now I can successfully compile latest branch. I have another question, that is before this fix, how does it pass compilation tests? Why does compilation fail on my machine? Is this because the compilation test environment is different from that of my machine?
@scott-5 currently abacus is compiled without pexsi in compilation tests, unit tests and integration tests. in the future we will add pexsi to the remote environment and enable the tests.