deepmedic
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deepmedic
Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans
Add a section in the README that describes how to check if GPUs are successfully visible. The code could also be logging this. E.g.: import tensorflow as tf print("Num GPUs...
- Add tests (test run, test config, test cnn3d) - Introduce `deepmedic/config` module to replace `deepmedic/frontEnd/configParsing` - Refactor `deepmedic/neuralnet` using new `ModelConfig` and `PathwayConfig` - Refactor `Cnn3d`, `Pathway`, `Block` in...
Main changes: All augmentations now use the augmentations.py file (other augmentation files are now obsolete) Sample- and Image-level augmentations have been unified and functions can be used interchangeably (even though...
Hello Sir, How could it be that at the end of the process, the report on the entire training is not returned , which is not always the case? ```...
I got a couple of emails so asking, so, here it is: In our work "Unsupervised domain adaptation in brain lesion segmentation with adversarial networks" (https://arxiv.org/abs/1612.08894, accepted in [IPMI 2017](http://www.ipmi2017.org/))...
Hi, I used avg_checkpoints.py from tensor2tensor to average some checkpoints generated by deepmedic but got the ValueError. May I ask how can I solve this issue? I'm attaching the detail...
Hello Sir, I want that the process of training only uses GPU memory as needed, or only grow with GPU memory. And for it, I changed the code in trainSession.py...
In the lower-row of plots (ie, training), the x-axis limit is wrong. This is because not initializing `maxNumOfEpsDurationOfExps` variable before plotting the lower-row. Attaching an example of wrong output plot....
