Dan Ofer
Dan Ofer
Hi @TheLostLambda We'd love to retrain proteinBert with improvements (a larger model, another convolution layer, and ideally, to remove the GO annotation as input (while keeping it as an output),...
Same issue - I tried running the default example (https://docs.ampligraph.org/en/latest/examples.html) and it fails on this
This could be a seperate readme file, no need to go overboard. e.g. "analcatdata" = "http://people.stern.nyu.edu/jsimonof/AnalCatData/" ?
+1 on this point. It would also be helpful to warn users that feature importance and the like are not supported with the catboost text features at least (which is...
Wouldn't this be more relevant as a supported output first? (Then input/coprediction)?
Another advantage of MRMR is that it's just very fast and decent guarantees. I'd like using it as a "filter" before other methods, and it's much better than just naively...
As I recall, it was too large to upload on github. We uploaded it elsewhere (maybe in the paper's supplementary?). REgardless, you can download the dataset's source from phosphoPTM. I...
The thing is, this means that it doesn't run if there's no internet connection
No idea what may be the reason. The differences are on an external dataset, right?