How to pass protein sequence as array of strings

[Zedonboy]

I have sequences in .csv file, how do i pass it to asap

[nadavbra]

Hi,

You need to first convert the sequences to the .lf format. It is a very simple FASTA-like format. You can see examples here: https://github.com/ddofer/asap/tree/master/data/phosphoserine

Also, I recommend you to look at our tutorial at: https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial

Good luck!

Nadav

On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer [email protected] wrote:

Assigned #2 https://github.com/ddofer/asap/issues/2 to @nadavbra https://github.com/nadavbra.

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#event-1778493197, or mute the thread https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt .

[Zedonboy]

Did some googling the format is rare. I can't find any service that convert . Csv to lf

On Thu, Aug 9, 2018, 2:41 PM nadavbra [email protected] wrote:

Hi,

You need to first convert the sequences to the .lf format. It is a very simple FASTA-like format. You can see examples here: https://github.com/ddofer/asap/tree/master/data/phosphoserine

Also, I recommend you to look at our tutorial at: https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial

Good luck!

Nadav

On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer [email protected] wrote:

Assigned #2 https://github.com/ddofer/asap/issues/2 to @nadavbra https://github.com/nadavbra.

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#event-1778493197, or mute the thread < https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt

.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#issuecomment-411760614, or mute the thread https://github.com/notifications/unsubscribe-auth/AVIoqE8JFd6s1zmDXw5N3n5uvibcD3KMks5uPDwRgaJpZM4V0ZZt .

[nadavbra]

There is no automatic tool that does this conversion; you will have to write some code to do that. Fortunately, the format is super simple.

On Thu, Aug 9, 2018 at 6:42 PM Zedonboy [email protected] wrote:

Did some googling the format is rare. I can't find any service that convert . Csv to lf

On Thu, Aug 9, 2018, 2:41 PM nadavbra [email protected] wrote:

Hi,

You need to first convert the sequences to the .lf format. It is a very simple FASTA-like format. You can see examples here: https://github.com/ddofer/asap/tree/master/data/phosphoserine

Also, I recommend you to look at our tutorial at: https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial

Good luck!

Nadav

On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer [email protected] wrote:

Assigned #2 https://github.com/ddofer/asap/issues/2 to @nadavbra https://github.com/nadavbra.

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#event-1778493197, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt

.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#issuecomment-411760614, or mute the thread < https://github.com/notifications/unsubscribe-auth/AVIoqE8JFd6s1zmDXw5N3n5uvibcD3KMks5uPDwRgaJpZM4V0ZZt

.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ddofer/asap/issues/2#issuecomment-411802864, or mute the thread https://github.com/notifications/unsubscribe-auth/ANgN4YjxP85fjHPqC-unS9C9TiO--woQks5uPFhbgaJpZM4V0ZZt .