proseg
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Performance on Intermediate Cell Types
How does it do on the classic breast cancer Xenium sample for myoepithelial cells, which have markers of two cell types?
myoepithelial cells demonstrate intermediate expression of tumor cell and muscle markers.
Publication: High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis, Nat. Comms.
I don't think I've run this particular dataset. I have a set of datasets that regularly rerun proseg on to test changes. I'll see about adding this to it to see how it compares.
Ah, yes, always worthwhile adding another unit test.