Compatibility with squidpy?

[jamesboot]

Hi,

Thanks for creating such a great tool, love the pre-print.

I'm thinking about applying this method to some CosMx data. I already have a pipeline for importing CosMx data into squidpy and then using some of the tools available there to perform spatial analysis. I was just wondering if it is possible to generate an AnnData object from the proseg outputs, or if you have any recommendations for analysis tools/packages downstream of proseg?

Cheers James