proseg icon indicating copy to clipboard operation
proseg copied to clipboard

Populuation of cell_metadata is not exactly the same

Open roanvanscheppingen opened this issue 8 months ago • 2 comments

The population column of cell_metadata describes the number of transcripts per cell. However, this differs from the transcript_metadata file.

Cell 0, population = 1185 -- transcripts in counts 1218 -- in expec counts = 1145,118 Cell 1, population = 448 -- transcripts in counts 508 -- in expec counts = 440,7789 Cell 2, population = 713 -- transcripts in counts 767 -- in expec counts = 685,7118

The values in counts are equal of those if you would subset the transcript_metadata file on the assignment column.

roanvanscheppingen avatar Jun 24 '24 08:06 roanvanscheppingen