docker-bio
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Published
20 hours ago •
dceoy
dceoy
Dockerfile repository for Bioinformatics
docker-bio
Dockerfile repository for Bioinformatics
Docker images
- Images on Docker Hub:
- abra2
- ~alfred~
- ascat
- bamsnap
- bcftools
- bedops
- bedtools
- bioconda
- bowtie2
- bwa
- bwa-mem2
- cufflinks
- cnvkit
- cnvnator
- cutadapt
- delly
- dicey
- elprep
- fastp
- fastq-dump
- fastqc
- fgbio
- ~freec~
- gatk
- gencore
- gffread
- gridss
- goleft
- hisat2
- ~igv~
- igv-webapp
- jbrowse
- kallisto
- ~last~
- ~lumpy~
- macs2
- manta
- miso
- msisensor
- msisensor-pro
- multiqc
- nirvana
- ~oncotator~
- picard
- ~pindel~
- prinseq
- rsem
- ~sambamba~
- samplot
- samtools
- seqkit
- ~sequenza~
- sigprofiler
- ~smoove~
- snpeff
- star
- strelka
- svtools
- trim_galore
- trimmomatic
- varscan
- vep
- Images requiring a user build:
- annovar
- bcl2fastq
- Images outside this repository:
Docker Compose
-
Pull an image
$ docker-compose pull <name> -
Build an image
$ docker-compose build <name>
Dependencies
Some images use the following tools:
- print-github-tags
- Tiny command to fetch repository tags or releases from GitHub
- GitHub - dceoy/print-github-tags
- clir
- R package manager for command line interface
- GitHub - dceoy/clir
- DockerHub - dceoy/clir
References
- abra2
- alfred
- annovar
- ascat
- bamsnap
- bcftools
- bcl2fastq
- bedops
- bedtools
- bioconda
- bowtie2
- bwa
- bwa-mem2
- canvas
- cn.mops
- cnvkit
- cufflinks
- cutadapt
- deepvariant
- delly
- dicey
- elprep
- fastp
- fastq-dump
- fastqc
- fgbio
- freec
- gatk
- gencore
- gffread
- gridss
- goleft
- hisat2
- igv:
- igv-webapp:
- jbrowse
- kallisto
- last
- lumpy
- macs2
- manta
- miso
- msisensor
- msisensor-pro
- multiqc
- nirvana
- oncotator
- picard
- pindel
- prinseq
- rsem
- sambamba
- samplot
- samtools
- seqkit
- sequenza
- sigprofiler
- smoove
- snpeff
- star
- strelka
- svtools
- trim_galore
- trimmomatic
- varscan
- vep
dceoy