Pan Plot as Roary

[MdUmar-tech]

I have successfully used OrthoFinder to identify orthologous gene clusters, but I am now interested in visualizing the pan-genome characteristics, the same as Roary. Specifically, I would like to generate a pan plot to gain insights into whether the pan-genome of our organisms is open or closed. The pan-genome plot, includes plotting the number of gene which includes conserved genes, total genes, or unique genes, new gene against the number of genomes. similar as in Roary analysis provided about conserved genes, total genes, and unique (new) genes for each genome.