OrthoFinder
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Setting Blastp evalue and other parameters
Hi!
I was wondering if there is a way to find out what specific parameters were used when OrthoFinder2 runs a piece of software, like Blastp. Also - is it possible to supply it with specific parameter settings?
For example, I would like to have OrthoFinder2 use Blast but with a cut-off of e-10. And I am unsure what e-value is used in Blastp when run under OrthoFinder normally - and would like to report the e-value used in the manuscript we are preparing.
Thank you :) Eric