OrthoFinder icon indicating copy to clipboard operation
OrthoFinder copied to clipboard

Setting Blastp evalue and other parameters

Open 000generic opened this issue 3 years ago • 0 comments

Hi!

I was wondering if there is a way to find out what specific parameters were used when OrthoFinder2 runs a piece of software, like Blastp. Also - is it possible to supply it with specific parameter settings?

For example, I would like to have OrthoFinder2 use Blast but with a cut-off of e-10. And I am unsure what e-value is used in Blastp when run under OrthoFinder normally - and would like to report the e-value used in the manuscript we are preparing.

Thank you :) Eric

000generic avatar Jul 21 '22 16:07 000generic