when it will complete,give me a "Failed"

[zhipengliux]

2021-11-17 23:18:58 : Written final scores for species 38 to graph file 2021-11-17 23:18:58 : Written final scores for species 39 to graph file 2021-11-17 23:18:58 : Ran MCL

Writing orthogroups to file

/tmp/_MEIzM2iyu/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty slice. /tmp/_MEIzM2iyu/numpy/core/_methods.py:85: RuntimeWarning: invalid value encountered in double_scalars Traceback (most recent call last): File "orthofinder.py", line 7, in File "scripts_of/main.py", line 1762, in main File "scripts_of/main.py", line 1389, in DoOrthogroups File "scripts_of/main.py", line 751, in Stats StopIteration [3789740] Failed to execute script orthofinder

like this!and only generate three files

[davidemms]

Hi

It has failed. You need to provide the complete set of protein sequences for each species you include, it looks like you might have only given it some sequences here?

Best wishes David