David López

Results 104 comments of David López

Alright, I was too eager to get this in and overlooked your updated comments in the PR description :sweat_smile: > This is still broken for inaccessible datasets within collections I...

Alright, I pushed a couple of commits to fix the remaining outstanding issue with inaccessible elements in collections. Basically, I just serialized the `accessible` attribute for `HDAObject`s and make sure...

Investigating test failures... of course, It couldn't be so easy... :laughing:

All green now, It wasn't that bad after all :sweat_smile:

Hi @lldelisle! Unfortunately running a single test is not currently possible in `planemo` (as far as I know) so this option is not available at the moment :disappointed: I see...

Thank you Marius for the link to the issue! I will keep this also open, so I don't forget to give it priority :)

Thanks @bgruening! using `GALAXY_CONFIG_X_FRAME_OPTIONS=''` is great to set the Galaxy configuration, but the CORS issue seems to be on the vscode webview side not in Galaxy. So I will have...

Yes, since the [v0.3.1 release](https://github.com/galaxyproject/galaxy-language-server/releases/tag/v0.3.1) of the VSCode/Codium extension we are using the [galaxy-tool-util==21.1.0.dev4](https://github.com/galaxyproject/galaxy-language-server/blob/b88afafba09acb36263820c7133f6d5f9a0368f3/server/requirements.txt#L4) wich should be the same for the latest release of planemo [here](https://github.com/galaxyproject/planemo/blob/bea6a16ab65e1925485cdd0f109434703e639368/requirements.txt#L10)

After further investigation on this issue, the problem seems to be a mismatch between the [latest IUC Coding Style documentation](https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/tool_xml.html#coding-style) and the latest [`TAG_ORDER`](https://github.com/galaxyproject/galaxy/blob/90b83bc83859bdb221cbc32a4098aad355a8242b/lib/galaxy/tool_util/linters/xml_order.py#L8) definition in galaxy-tool-util. There is also...