David Kelley

That looks correct to me. Are you using a fast GPU for training? It's possible that you haven't seen output because it's still working on the first epoch. Do you...

Is it possible that the heads specified in your parameters file are in a different order than the datasets given to the training script? The 8 vs 12 mismatch could...

Hi Andy, that notebook isn't up to date for tensorflow2.*; sorry about that. I'll work on cleaning it up this week. In the meantime, you could try using the same...

Yup, the model that I pointed you to above has many LCL-relevant datasets. You can see the full list here: https://github.com/calico/basenji/blob/master/manuscripts/cross2020/targets_human.txt

In case it's still beneficial to you, I just pushed an update to the tutorials.

Hi, I'm not sure that I understand. Are you having a problem installing the dependencies? Which package is causing the problem? I don't understand what this might have to do...

I'm still a little confused; LayerNormalization is a Tensorflow class, not an import. This sounds like the type of thing that might be bespoke to your setup and/or will work...

I haven't reinstalled in awhile, so not sure. Which tutorial in particular is giving errors? I didn't think any of them use LayerNormalization.

Hi Dan, we're in the process of cleaning up the installation to try to avoid problems like this in the future. In the meantime, can you elaborate on the error...

Hi, I tracked down the problem. I revised the way DNA is stored in the TFRecords, but forgot to update this. Delete your data/heart_l131k and data/heart_l131k.tgz and redownload from the...