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datalad
Convert `.travis.yml` to GitHub Actions workflow
Codecov Report
All modified and coverable lines are covered by tests :white_check_mark:
Project coverage is 91.65%. Comparing base (
06d64fb) to head (a2f9cf5).
:exclamation: Current head a2f9cf5 differs from pull request most recent head fb45559
Please upload reports for the commit fb45559 to get more accurate results.
Additional details and impacted files
@@ Coverage Diff @@
## maint #7600 +/- ##
==========================================
+ Coverage 91.28% 91.65% +0.37%
==========================================
Files 325 325
Lines 43459 43462 +3
Branches 5781 5781
==========================================
+ Hits 39672 39837 +165
+ Misses 3772 3610 -162
Partials 15 15
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![codecov[bot] avatar](https://avatars.githubusercontent.com/in/254?v=4 "Published by a pub.dev verified publisher"){kind=small}
on NFS:
=========================== short test summary info ============================
FAILED ../datalad/tests/test_archives.py::test_decompress_file[strip] - AssertionError: assert False
+ where False = <function exists at 0x7f91c75344d0>('/tmp/nfsmount/datalad-wfvyq6ly/simple-extracted/3.txt')
+ where <function exists at 0x7f91c75344d0> = op.exists
+ and '/tmp/nfsmount/datalad-wfvyq6ly/simple-extracted/3.txt' = <function join at 0x7f91ceba4d40>('/tmp/nfsmount/datalad-wfvyq6ly/simple-extracted', '3.txt')
+ where <function join at 0x7f91ceba4d40> = op.join
FAILED ../datalad/tests/test_archives.py::test_ExtractedArchive - assert [' |;&%b5{}\'...Йקم๗あ .datc '] == [' |;&%b5{}\'....dbtc /3.txt']
Right contains one more item: ' |;&%b5{}\'"<>ΔЙקم๗あ .dbtc /3.txt'
Full diff:
[
' |;&%b5{}\'"<>ΔЙקم๗あ .dbtc / |;&%b5{}\'"<>ΔЙקم๗あ .datc ',
- ' |;&%b5{}\'"<>ΔЙקم๗あ .dbtc /3.txt',
]
FAILED ../datalad/tests/test_tests_utils_pytest.py::test_with_tempfile_mkdir - assert False
FAILED ../datalad/support/tests/test_annexrepo.py::test_commit_annex_commit_changed[True]
FAILED ../datalad/support/tests/test_annexrepo.py::test_commit_annex_commit_changed[False]
= 5 failed, 441 passed, 40 skipped, 1 xpassed, 6 warnings in 986.59s (0:16:26) =
need to review those tests -- we might have been checking for NFS already but in a "travis specific" way... adjusting now and will push.
evil Russian encoding -- caused Python segfault, restarting now
[gw1] [ 24%] PASSED ../datalad/interface/tests/test_utils.py::test_incorrect_msg_interpolation
../datalad/interface/tests/test_utils.py::test_custom_result_renderer
[gw1] [ 24%] PASSED ../datalad/interface/tests/test_utils.py::test_custom_result_renderer
../datalad/interface/tests/test_utils.py::test_custom_result_summary_renderer
[gw1] [ 24%] PASSED ../datalad/interface/tests/test_utils.py::test_custom_result_summary_renderer
Fatal Python error: Segmentation fault
Thread 0x00007f8ffa8be640 (most recent call first):
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/threading.py", line 306 in wait
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/threading.py", line 558 in wait
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/tqdm/_monitor.py", line 60 in run
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x00007f9012fff640 (most recent call first):
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 534 in read
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 567 in from_io
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 1160 in _thread_receiver
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 341 in run
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 411 in _perform_spawn
Current thread 0x00007f9013db1740 (most recent call first):
File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1101 in create_module
File "<frozen importlib._bootstrap>", line 556 in module_from_spec
File "<frozen importlib._bootstrap>", line 657 in _load_unlocked
File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 991 in _find_and_load
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/pdb.py", line 157 in __init__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/doctest.py", line 363 in __init__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/doctest.py", line 1469 in run
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/doctest.py", line 1844 in run
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/doctest.py", line 304 in runtest
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 173 in pytest_runtest_call
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_callers.py", line 103 in _multicall
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_manager.py", line 120 in _hookexec
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_hooks.py", line 513 in __call__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 241 in <lambda>
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 341 in from_call
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 240 in call_and_report
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 135 in runtestprotocol
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/runner.py", line 116 in pytest_runtest_protocol
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_callers.py", line 103 in _multicall
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_manager.py", line 120 in _hookexec
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_hooks.py", line 513 in __call__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/xdist/remote.py", line 195 in run_one_test
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/xdist/remote.py", line 174 in pytest_runtestloop
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_callers.py", line 103 in _multicall
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_manager.py", line 120 in _hookexec
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_hooks.py", line 513 in __call__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/main.py", line 339 in _main
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/main.py", line 285 in wrap_session
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/_pytest/main.py", line 332 in pytest_cmdline_main
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_callers.py", line 103 in _multicall
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_manager.py", line 120 in _hookexec
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/pluggy/_hooks.py", line 513 in __call__
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/xdist/remote.py", line 393 in <module>
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 1291 in executetask
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 341 in run
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 411 in _perform_spawn
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 389 in integrate_as_primary_thread
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 1273 in serve
File "/tmp/dl-miniconda-hecu530u/lib/python3.8/site-packages/execnet/gateway_base.py", line 1806 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
Error: The operation was canceled.
- datalad-next testing is unrelated to these changes -- reported https://github.com/datalad/datalad-next/issues/705
UTF-8 one keeps segfaulting, I will boost to 3.11 version so we have most fixed python version to debug...
nope -- still segfaults , now mentioned that 1 test process segfaults right away
platform linux -- Python 3.11.9, pytest-8.2.1, pluggy-1.5.0 -- /tmp/dl-miniconda-8nv_7dqk/bin/python
cachedir: .pytest_cache
rootdir: /home/runner/work/datalad/datalad
configfile: tox.ini
plugins: cov-5.0.0, xdist-3.6.1, fail-slow-0.5.0
created: 2/2 workers
2 workers [1192 items]
scheduling tests via LoadScheduling
../datalad/__init__.py::datalad.enable_librarymode
Fatal Python error: Segmentation fault
Thread 0x00007f413ddff[64](https://github.com/datalad/datalad/actions/runs/9181291034/job/25247702054?pr=7600#step:18:65)0 (most recent call first):
File "/tmp/dl-miniconda-8nv_7dqk/lib/python3.11/site-packages/execnet/gateway_base.py", line 534 in read
File "/tmp/dl-miniconda-8nv_7dqk/lib/python3.11/site-packages/execnet/gateway_base.py", line 5[67](https://github.com/datalad/datalad/actions/runs/9181291034/job/25247702054?pr=7600#step:18:68) in from_io
File "/tmp/dl-miniconda-8nv_7dqk/lib/python3.11/site-packages/execnet/gateway_base.py", line 1160 in _thread_receiver
File "/tmp/dl-miniconda-8nv_7dqk/lib/python3.11/site-packages/execnet/gateway_base.py", line 341 in run
File "/tmp/dl-miniconda-8nv_7dqk/lib/python3.11/site-packages/execnet/gateway_base.py", line 411 in _perform_spawn
Current thread 0x00007f413effe740 (most recent call first):
File "<frozen importlib._bootstrap>", line 241 in _call_with_frames_removed
I will now try (as a measure of last resort) to disable parallelization for that run ...
ok, we are green and ready to merge (appveyor Windows run stalled / got killed at 1hr mark)! @datalad/developers please chime in! We got a slight boost to coverage by again exploring more code paths and I even had to fix a bug in version checking for rsync.
If no objections, will merge in a few days.
