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datajoint
datajoint
MySQL Error with python 3.10 and datajoint 0.13.3 - SSL: SSLV3_ALERT_HANDSHAKE_FAILURE
Bug Report
Description
DataJoint fails to connect with python 3.10 and datajoint 0.13.3 but works with python 3.9.10 and datajoint 0.13.3. See conda environments and error output below.
Reproducibility
Include:
- OS: Mac OS
- Python Version: 3.10.2
- MySQL Version: 5.7 https://github.com/datajoint/mysql-docker
- MySQL Deployment: Strategy local-docker
- DataJoint Version: 0.13.3
- Minimum number of steps to reliably reproduce the issue
import datajoint as dj
dj.config["database.host"] = "localhost"
dj.config["database.user"] = "root"
dj.config["database.password"] = "simple"
dj.conn()
Maybe a pymysql issue?
Error using datajoint 0.13.3 and python 3.10.2
Connecting root@localhost:3306
---------------------------------------------------------------------------
SSLError Traceback (most recent call last)
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py:633, in Connection.connect(self, sock)
[632](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=631)[ self._get_server_information()
--> ]()[633](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=632)[ self._request_authentication()
]()[635](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=634)[ if self.sql_mode is not None:
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py:849, in Connection._request_authentication(self)
]()[847](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=846)[ self.write_packet(data_init)
--> ]()[849](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=848)[ self._sock = self.ctx.wrap_socket(self._sock, server_hostname=self.host)
]()[850](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=849)[ self._rfile = self._sock.makefile("rb")
File ~/opt/conda/envs/py310/lib/python3.10/ssl.py:512, in SSLContext.wrap_socket(self, sock, server_side, do_handshake_on_connect, suppress_ragged_eofs, server_hostname, session)
]()[506](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=505)[ def wrap_socket(self, sock, server_side=False,
]()[507](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=506)[ do_handshake_on_connect=True,
]()[508](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=507)[ suppress_ragged_eofs=True,
]()[509](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=508)[ server_hostname=None, session=None):
]()[510](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=509)[ # SSLSocket class handles server_hostname encoding before it calls
]()[511](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=510)[ # ctx._wrap_socket()
--> ]()[512](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=511)[ return self.sslsocket_class._create(
]()[513](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=512)[ sock=sock,
]()[514](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=513)[ server_side=server_side,
]()[515](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=514)[ do_handshake_on_connect=do_handshake_on_connect,
]()[516](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=515)[ suppress_ragged_eofs=suppress_ragged_eofs,
]()[517](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=516)[ server_hostname=server_hostname,
]()[518](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=517)[ context=self,
]()[519](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=518)[ session=session
]()[520](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=519)[ )
File ~/opt/conda/envs/py310/lib/python3.10/ssl.py:1070, in SSLSocket._create(cls, sock, server_side, do_handshake_on_connect, suppress_ragged_eofs, server_hostname, context, session)
]()[1069](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1068)[ raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
-> ]()[1070](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1069)[ self.do_handshake()
]()[1071](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1070)[ except (OSError, ValueError):
File ~/opt/conda/envs/py310/lib/python3.10/ssl.py:1341, in SSLSocket.do_handshake(self, block)
]()[1340](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1339)[ self.settimeout(None)
-> ]()[1341](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1340)[ self._sslobj.do_handshake()
]()[1342](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/ssl.py?line=1341)[ finally:
SSLError: [SSL: SSLV3_ALERT_HANDSHAKE_FAILURE] sslv3 alert handshake failure (_ssl.c:997)
During handling of the above exception, another exception occurred:
OperationalError Traceback (most recent call last)
/Users/joseph/Documents/datajoint/projects/CiM/wt-causality-in-motion/scratch/scratch3.py in <cell line: 5>()
]()[3](file:///Users/joseph/Documents/datajoint/projects/CiM/wt-causality-in-motion/scratch/scratch3.py?line=2)[ dj.config["database.user"] = "root"
]()[4](file:///Users/joseph/Documents/datajoint/projects/CiM/wt-causality-in-motion/scratch/scratch3.py?line=3)[ dj.config["database.password"] = "simple"
----> ]()[5](file:///Users/joseph/Documents/datajoint/projects/CiM/wt-causality-in-motion/scratch/scratch3.py?line=4)[ dj.conn()
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py:119, in conn(host, user, password, init_fun, reset, use_tls)
]()[117](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=116)[ init_fun = init_fun if init_fun is not None else config['connection.init_function']
]()[118](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=117)[ use_tls = use_tls if use_tls is not None else config['database.use_tls']
--> ]()[119](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=118)[ conn.connection = Connection(host, user, password, None, init_fun, use_tls)
]()[120](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=119)[ return conn.connection
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py:178, in Connection.__init__(self, host, user, password, port, init_fun, use_tls)
]()[176](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=175)[ self._conn = None
]()[177](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=176)[ self._query_cache = None
--> ]()[178](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=177)[ connect_host_hook(self)
]()[179](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=178)[ if self.is_connected:
]()[180](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=179)[ logger.info("Connected {user}@{host}:{port}".format(**self.conn_info))
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py:45, in connect_host_hook(connection_obj)
]()[42](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=41)[ raise errors.DataJointError(
]()[43](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=42)[ "Connection plugin '{}' not found.".format(plugin_name))
]()[44](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=43)[ else:
---> ]()[45](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=44)[ connection_obj.connect()
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py:201, in Connection.connect(self)
]()[199](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=198)[ warnings.filterwarnings('ignore', '.*deprecated.*')
]()[200](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=199)[ try:
--> ]()[201](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=200)[ self._conn = client.connect(
]()[202](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=201)[ init_command=self.init_fun,
]()[203](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=202)[ sql_mode="NO_ZERO_DATE,NO_ZERO_IN_DATE,ERROR_FOR_DIVISION_BY_ZERO,"
]()[204](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=203)[ "STRICT_ALL_TABLES,NO_ENGINE_SUBSTITUTION,ONLY_FULL_GROUP_BY",
]()[205](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=204)[ charset=config['connection.charset'],
]()[206](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=205)[ **{k: v for k, v in self.conn_info.items()
]()[207](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=206)[ if k not in ['ssl_input', 'host_input']})
]()[208](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=207)[ except client.err.InternalError:
]()[209](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=208)[ self._conn = client.connect(
]()[210](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=209)[ init_command=self.init_fun,
]()[211](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=210)[ sql_mode="NO_ZERO_DATE,NO_ZERO_IN_DATE,ERROR_FOR_DIVISION_BY_ZERO,"
(...)
]()[215](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=214)[ if not(k in ['ssl_input', 'host_input'] or
]()[216](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/datajoint/connection.py?line=215)[ k == 'ssl' and self.conn_info['ssl_input'] is None)})
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py:353, in Connection.__init__(self, user, password, host, database, unix_socket, port, charset, sql_mode, read_default_file, conv, use_unicode, client_flag, cursorclass, init_command, connect_timeout, read_default_group, autocommit, local_infile, max_allowed_packet, defer_connect, auth_plugin_map, read_timeout, write_timeout, bind_address, binary_prefix, program_name, server_public_key, ssl, ssl_ca, ssl_cert, ssl_disabled, ssl_key, ssl_verify_cert, ssl_verify_identity, compress, named_pipe, passwd, db)
]()[351](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=350)[ self._sock = None
]()[352](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=351)[ else:
--> ]()[353](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=352)[ self.connect()
File ~/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py:664, in Connection.connect(self, sock)
]()[662](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=661)[ if DEBUG:
]()[663](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=662)[ print(exc.traceback)
--> ]()[664](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=663)[ raise exc
]()[666](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=665)[ # If e is neither DatabaseError or IOError, It's a bug.
]()[667](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=666)[ # But raising AssertionError hides original error.
]()[668](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=667)[ # So just reraise it.
]()[669](file:///Users/joseph/opt/conda/envs/py310/lib/python3.10/site-packages/pymysql/connections.py?line=668)[ raise
OperationalError: (2003, "Can't connect to MySQL server on 'localhost' ([SSL: SSLV3_ALERT_HANDSHAKE_FAILURE] sslv3 alert handshake failure (_ssl.c:997))")]()
Packages installed for python 3.10.2 environment
# Name Version Build Channel
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.2 py310hbe9552e_2 conda-forge
argh 0.26.2 pyh9f0ad1d_1002 conda-forge
asttokens 2.0.5 pyhd8ed1ab_0 conda-forge
atk-1.0 2.36.0 heb41896_4 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h3422bc3_6 conda-forge
brotli-bin 1.0.9 h3422bc3_6 conda-forge
brotlipy 0.7.0 py310he2143c4_1003 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
ca-certificates 2021.10.8 h4653dfc_0 conda-forge
cairo 1.16.0 h933af38_1010 conda-forge
certifi 2021.10.8 py310hbe9552e_1 conda-forge
cffi 1.15.0 py310hf10583b_0 conda-forge
click 8.0.4 py310hbe9552e_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
configparser 5.2.0 pyhd8ed1ab_0 conda-forge
cryptography 36.0.2 py310hf1846ab_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
datajoint 0.13.3 pypi_0 pypi
debugpy 1.5.1 py310h1b49c16_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 0.8.3 pyhd8ed1ab_0 conda-forge
expat 2.4.7 h6b3803e_0 conda-forge
flask 2.0.3 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.96 hfb34624_2 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.31.2 py310hf8d0d8f_0 conda-forge
freetype 2.10.4 h17b34a0_1 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
future 0.18.2 py310hbe9552e_4 conda-forge
gdk-pixbuf 2.42.8 hdded42e_0 conda-forge
gettext 0.19.8.1 h049c9fb_1008 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
graphite2 1.3.13 h9f76cd9_1001 conda-forge
graphviz 3.0.0 hd4d4665_1 conda-forge
gtk2 2.24.33 h57013de_2 conda-forge
gts 0.7.6 h4b6d4d6_2 conda-forge
harfbuzz 4.1.0 hc345670_0 conda-forge
icu 69.1 hbdafb3b_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
ipykernel 6.9.2 py310hc469350_0 conda-forge
ipython 8.1.1 py310hbe9552e_0 conda-forge
itsdangerous 2.1.1 pyhd8ed1ab_0 conda-forge
jbig 2.1 h3422bc3_2003 conda-forge
jedi 0.18.1 py310hbe9552e_0 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jpeg 9e h3422bc3_0 conda-forge
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.2 py310hbe9552e_0 conda-forge
kiwisolver 1.4.0 py310hea002bf_0 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
lerc 3.0 hbdafb3b_0 conda-forge
libblas 3.9.0 13_osxarm64_openblas conda-forge
libbrotlicommon 1.0.9 h3422bc3_6 conda-forge
libbrotlidec 1.0.9 h3422bc3_6 conda-forge
libbrotlienc 1.0.9 h3422bc3_6 conda-forge
libcblas 3.9.0 13_osxarm64_openblas conda-forge
libcxx 13.0.1 h6a5c8ee_0 conda-forge
libdeflate 1.10 h3422bc3_0 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgd 2.3.3 ha764fb0_2 conda-forge
libgfortran 5.0.0.dev0 11_0_1_hf114ba7_23 conda-forge
libgfortran5 11.0.1.dev0 hf114ba7_23 conda-forge
libglib 2.70.2 h67e64d8_4 conda-forge
libiconv 1.16 h642e427_0 conda-forge
liblapack 3.9.0 13_osxarm64_openblas conda-forge
libopenblas 0.3.18 openmp_h5dd58f0_0 conda-forge
libpng 1.6.37 hf7e6567_2 conda-forge
librsvg 2.52.5 h6312b7c_2 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libtiff 4.3.0 h77dc3b6_3 conda-forge
libtool 2.4.6 hbdafb3b_1008 conda-forge
libwebp 1.2.2 h0d20362_0 conda-forge
libwebp-base 1.2.2 h3422bc3_1 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.9.12 hedbfbf4_1 conda-forge
libzlib 1.2.11 hee7b306_1013 conda-forge
llvm-openmp 13.0.1 h455960f_1 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
markupsafe 2.1.1 py310hf8d0d8f_0 conda-forge
matplotlib-base 3.5.1 py310hacb9267_0 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
minio 7.1.5 pyhd8ed1ab_0 conda-forge
mscorefonts 0.0.1 3 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
ncurses 6.3 hc470f4d_0 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
networkx 2.7.1 pyhd8ed1ab_1 conda-forge
numpy 1.22.3 py310h2e04ed8_0 conda-forge
openjpeg 2.4.0 h062765e_1 conda-forge
openssl 1.1.1n h90dfc92_0 conda-forge
otumat 0.3.1 pyhd8ed1ab_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.4.1 py310hdead3df_0 conda-forge
pango 1.50.6 h9fd36ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.0.1 py310hade9107_2 conda-forge
pip 22.0.4 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
prompt-toolkit 3.0.27 pyha770c72_0 conda-forge
psutil 5.9.0 py310he2143c4_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydot 1.4.2 py310hbe9552e_1 conda-forge
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pymysql 1.0.2 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 py310hbe9552e_4 conda-forge
python 3.10.2 hd16f9c5_4_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.10 2_cp310 conda-forge
pyttk 0.3.2 py_0 conda-forge
pytz 2022.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py310he2143c4_3 conda-forge
pyzmq 22.3.0 py310h7939bef_1 conda-forge
readline 8.1 hedafd6a_0 conda-forge
scipy 1.8.0 py310h6ecf4ae_1 conda-forge
setuptools 60.10.0 py310hbe9552e_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.37.1 h7e3ccbd_0 conda-forge
stack_data 0.2.0 pyhd8ed1ab_0 conda-forge
tk 8.6.12 he1e0b03_0 conda-forge
tornado 6.1 py310he2143c4_2 conda-forge
tqdm 4.63.1 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
tzdata 2022a h191b570_0 conda-forge
unicodedata2 14.0.0 py310he2143c4_0 conda-forge
urllib3 1.26.9 pyhd8ed1ab_0 conda-forge
watchdog 2.1.6 py310he2143c4_1 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
werkzeug 2.0.3 pyhd8ed1ab_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xz 5.2.5 h642e427_1 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zlib 1.2.11 hee7b306_1013 conda-forge
zstd 1.5.2 h861e0a7_0 conda-forge
Packages installed for python 3.9.10 environment
# Name Version Build Channel
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.2 py39h2804cbe_2 conda-forge
argh 0.26.2 pyh9f0ad1d_1002 conda-forge
asttokens 2.0.5 pyhd8ed1ab_0 conda-forge
atk-1.0 2.36.0 heb41896_4 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h3422bc3_6 conda-forge
brotli-bin 1.0.9 h3422bc3_6 conda-forge
brotlipy 0.7.0 py39h5161555_1003 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
ca-certificates 2021.10.8 h4653dfc_0 conda-forge
cairo 1.16.0 h933af38_1010 conda-forge
certifi 2021.10.8 py39h2804cbe_1 conda-forge
cffi 1.15.0 py39h52b1de0_0 conda-forge
click 8.0.4 py39h2804cbe_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
configparser 5.2.0 pyhd8ed1ab_0 conda-forge
cryptography 36.0.2 py39hbe5e4b8_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
datajoint 0.13.3 pypi_0 pypi
debugpy 1.5.1 py39hfb83b0d_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 0.8.3 pyhd8ed1ab_0 conda-forge
expat 2.4.7 h6b3803e_0 conda-forge
flask 2.0.3 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.96 hfb34624_2 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.31.2 py39hb18efdd_0 conda-forge
freetype 2.10.4 h17b34a0_1 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
future 0.18.2 py39h2804cbe_4 conda-forge
gdk-pixbuf 2.42.8 hdded42e_0 conda-forge
gettext 0.19.8.1 h049c9fb_1008 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
graphite2 1.3.13 h9f76cd9_1001 conda-forge
graphviz 3.0.0 hd4d4665_1 conda-forge
gtk2 2.24.33 h57013de_2 conda-forge
gts 0.7.6 h4b6d4d6_2 conda-forge
harfbuzz 4.1.0 hc345670_0 conda-forge
icu 69.1 hbdafb3b_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
ipykernel 6.9.2 py39h32adebf_0 conda-forge
ipython 8.1.1 py39h2804cbe_0 conda-forge
itsdangerous 2.1.1 pyhd8ed1ab_0 conda-forge
jbig 2.1 h3422bc3_2003 conda-forge
jedi 0.18.1 py39h2804cbe_0 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jpeg 9e h3422bc3_0 conda-forge
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.2 py39h2804cbe_0 conda-forge
kiwisolver 1.4.0 py39h2c803a9_0 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
lerc 3.0 hbdafb3b_0 conda-forge
libblas 3.9.0 13_osxarm64_openblas conda-forge
libbrotlicommon 1.0.9 h3422bc3_6 conda-forge
libbrotlidec 1.0.9 h3422bc3_6 conda-forge
libbrotlienc 1.0.9 h3422bc3_6 conda-forge
libcblas 3.9.0 13_osxarm64_openblas conda-forge
libcxx 13.0.1 h6a5c8ee_0 conda-forge
libdeflate 1.10 h3422bc3_0 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgd 2.3.3 ha764fb0_2 conda-forge
libgfortran 5.0.0.dev0 11_0_1_hf114ba7_23 conda-forge
libgfortran5 11.0.1.dev0 hf114ba7_23 conda-forge
libglib 2.70.2 h67e64d8_4 conda-forge
libiconv 1.16 h642e427_0 conda-forge
liblapack 3.9.0 13_osxarm64_openblas conda-forge
libopenblas 0.3.18 openmp_h5dd58f0_0 conda-forge
libpng 1.6.37 hf7e6567_2 conda-forge
librsvg 2.52.5 h6312b7c_2 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libtiff 4.3.0 h77dc3b6_3 conda-forge
libtool 2.4.6 hbdafb3b_1008 conda-forge
libwebp 1.2.2 h0d20362_0 conda-forge
libwebp-base 1.2.2 h3422bc3_1 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.9.12 hedbfbf4_1 conda-forge
libzlib 1.2.11 hee7b306_1013 conda-forge
llvm-openmp 13.0.1 h455960f_1 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
markupsafe 2.1.1 py39hb18efdd_0 conda-forge
matplotlib-base 3.5.1 py39h5aa4fe7_0 conda-forge
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
minio 7.1.5 pyhd8ed1ab_0 conda-forge
mscorefonts 0.0.1 3 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
ncurses 6.3 hc470f4d_0 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
networkx 2.7.1 pyhd8ed1ab_1 conda-forge
numpy 1.22.3 py39h690d673_0 conda-forge
openjpeg 2.4.0 h062765e_1 conda-forge
openssl 1.1.1n h90dfc92_0 conda-forge
otumat 0.3.1 pyhd8ed1ab_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.4.1 py39h7f752ed_0 conda-forge
pango 1.50.6 h9fd36ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.0.1 py39hd72dd6b_2 conda-forge
pip 22.0.4 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
prompt-toolkit 3.0.27 pyha770c72_0 conda-forge
psutil 5.9.0 py39h5161555_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydot 1.4.2 py39h2804cbe_1 conda-forge
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pymysql 1.0.2 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 py39h2804cbe_4 conda-forge
python 3.9.10 hd16f9c5_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 2_cp39 conda-forge
pyttk 0.3.2 py_0 conda-forge
pytz 2022.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py39h5161555_3 conda-forge
pyzmq 22.3.0 py39h02c6a76_1 conda-forge
readline 8.1 hedafd6a_0 conda-forge
scipy 1.8.0 py39h5060c3b_1 conda-forge
setuptools 60.10.0 py39h2804cbe_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.37.1 h7e3ccbd_0 conda-forge
stack_data 0.2.0 pyhd8ed1ab_0 conda-forge
tk 8.6.12 he1e0b03_0 conda-forge
tornado 6.1 py39h5161555_2 conda-forge
tqdm 4.63.1 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
tzdata 2022a h191b570_0 conda-forge
unicodedata2 14.0.0 py39h5161555_0 conda-forge
urllib3 1.26.9 pyhd8ed1ab_0 conda-forge
watchdog 2.1.6 py39h5161555_1 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
werkzeug 2.0.3 pyhd8ed1ab_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xz 5.2.5 h642e427_1 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zlib 1.2.11 hee7b306_1013 conda-forge
zstd 1.5.2 h861e0a7_0 conda-forge
Just a follow-up, based on this error message "do_handshake_on_connect should not be specified for non-blocking sockets", setting the config option "database.use_tls": false as opposed to the default of null resolves the connection error.
Hmm, this is odd. Would be easier to debug once we get test coverage over py3.10 but #1011 would need to be addressed first. Something to note is that use_tls=False should be set carefully because this will make the connection socket and traffic unencrypted. For connections across the public web this is not generally recommended as anyone 'sniffing' could see the queries/results. Mostly concerns those using it on data that is to remain private.
Ah, looks like this is related to updates in python 3.10 that has increased the security requirements to no longer allow RSA. We should see if we can update to use ed-25519.
https://stackoverflow.com/questions/71006708/getting-sslv3-alert-handshake-failure-when-trying-to-connect-to-imap
I just spoke with a user who experienced this issue on windows. Should we limit official support to ≥3.7, ≤3.9 until this can be addressed? Or include a qualification about 3.10 in documentation?
I just want to add that I also have this issue with Python 3.10 and the latest version of datajoint 0.14.0.
@rly Thanks for the report! :handshake:
We are working on adding test coverage for Python 3.10+ but it had the unfortunate side effect of breaking our current test suite, nosetests. Nose is unfortunately now obsolete and we are working on converting our test suite to pytest as that will be better for sustainability. So far, we've started with test_connection but more are coming.
If you are interested in helping out, we'd appreciate any contributions to either patching this issue or converting other tests if you have bandwidth. Just let us know if you have any questions and we can help.
I'm getting this too. All we need to do is specify TLSv1.3 for the connection and we are good. Can you just tell us how to do that? I looked at the code and it's not clear what to modify.
Just an update: On Ubuntu it seems to work with python 3.11.4. pymysql is version 1.4.6 and datajoint version is 0.13.8. Maybe some fixes from the pymysql library? Have not tested it on Windows though.
