Error: buffer overflow detected: terminated; Aborted (core dumped)

[xuebingjie1990]

I'm trying to use igd search in the bedhost endpoint that searches bed files by given genomic internal. I tested it with

igd create $BEDBASE_DATA_PATH_HOST/bed_files $BEDBASE_DATA_PATH_HOST/outputs bedbaseigd
igd search $BEDBASE_DATA_PATH_HOST/outputs/bedbaseigd.igd -r chr1 1103243 2103332

and got the following error

*** buffer overflow detected ***: terminated
Aborted (core dumped)

============================================================= update:

if my working dir is $BEDBASE_DATA_PATH_HOST (/home/bx2ur/Documents/Projects/bedbase_tutorial)

this works:

igd search ./outputs/bedbaseigd.igd -r chr1 1103243 2103332

but this won't work:

igd search $BEDBASE_DATA_PATH_HOST/outputs/bedbaseigd.igd -r chr1 1103243 2103332
igd search /home/bx2ur/Documents/Projects/bedbase_tutorial/outputs/bedbaseigd.igd -r chr1 1103243 2103332

[donaldcampbelljr]

This has also happening to me using Ubuntu 22. However, it is not consistent, e.g. other users (@sanghoonio) on MacOS are not encountering this, using the same input and query files.

[donaldcampbelljr]

I did a fresh install using another system (WSL2, Ubuntu 22) and it works fine on that build.