gossamer
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data61
Gossamer bioinformatics suite
Summary statistics are not written to the output as the [document says](https://github.com/data61/gossamer/blob/master/docs/xenome.md). The Docker container stalls forever after the job is done, but the summary statistics are never returned.
When using `xenome classify`, if the reads in the FASTQ file include `N`, those reads go to `neither`, which may be a lot. Does it mean there is an identical...
Hi there, I'm testing `xenome classify` on an aws instance (latest Ubuntu) and it hangs after about 50 minutes. The command I used for launching the process is ``` xenome...
Hi, During installation Gossamer through CMAKE,I met this kind of error. ---------error message--------- -- The C compiler identification is GNU 11.4.0 -- The CXX compiler identification is GNU 11.4.0 --...
I am trying to generate new xenome indices with the latest human and mouse assembly files. I am running on a 240 GB machine using 24 cores. However, the software...
hi, Can "xenome classify" output the fastq.gz file directly?
Scanning dependencies of target gosslib [ 1%] Building CXX object src/CMakeFiles/gosslib.dir/GossCmdReg.cc.o cc1plus: error: unrecognized command line option "-std=c++11" make[2]: *** [src/CMakeFiles/gosslib.dir/GossCmdReg.cc.o] Error 1 make[1]: *** [src/CMakeFiles/gosslib.dir/all] Error 2 make: ***...
Hello, I am using xenome classify to process xenograft RNA-seq data. The output species specific .fastq files are missing '@' or '>' and the STAR aligner is unable to map.
Hi, We have used several versions of boost (48 - 72) and all end up with error such as[ 40%] Built target gossapp [ 40%] Building CXX object src/CMakeFiles/goss.dir/goss.cc.o [...
Hi, I am trying to build an index using xenome index for mouse and human primary assemblies. but it always give an error: "could not find the human genome assembly"....
