Yingyao Zhou
[6umx.cif.gz](https://github.com/user-attachments/files/18582712/6umx.cif.gz) (Please gunzip the attached 6umx.cif.gz into 6umx.cif first) In this example, the chain names are wrong. Chain names should be A,B,H,L,h,l (based on coordinate portion of the .cif file)....
**Describe the issue**: In the example code below, I try to monitor the progress of a cluster compute. It does return the right results, but there is always an exception...
Boltz2 currently seems unable to support .cif files generated by BioPython (b/c it does not contain entity.id section). This can be reproduced with the following code. First we generate a...
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The alignment object from Bio.Align.PairwiseAligner now only displays 60 residues per row, which is inconvenient for longer proteins. The 60-char limit came from old hardware. The format_alignment in Bio.pairwise2 can...