dalliance
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dasmoth
Interactive web-based genome browser.
Feature info popups are the only place where the old popup system is used. They don't work well on touch-screen devices, and have severe formatting problems when large amounts of...
To enable viewing of genes/exons in the forward order (5'->3') if present on the minus strand. With reference to google groups discussion (https://groups.google.com/forum/#!topic/biodalliance-dev/OjYwCAk2XFo). Kind regards, Pär
A useful thing would be an overview pane of genes. It could be used for orientation (highlightening current exon you are looking at) but also for quick navigation between different...
@dasmoth, many thanks for the work on coordinate mapping #82. I observed that in Dalliance's implementation, coordinate mapping is not applied to sequence tracks (`2bit` or `DASSequence`), but only to...
The initial mapping code took a conservative approach and discarded "broken" features. This works well for mapping between similar assemblies, but is sub-optimal between more distant species, and potentially interferes...
In particular, allow search by track name and description. Extra controls for sort order and grouping may be useful, too.
For large pileups and large number of tracks it is nice to be able to scroll only vertically through a lot of information. The slight horizontal scrolling that occurs is...
You mentioned this in your TODO list and I just wanted to add a +1. This would make comparing information from various features easier and would allow one to copy...
Ideally, should be using flexbox-based layouts here. Add tutorial for Dalliance-in-flexbox? But would be good to make the programatic solution work better too.