dask-image
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dask
Distributed image processing
Suggestion from Marvin, about how we might improve the `find_objects` function https://github.com/dask/dask-image/pull/240#discussion_r681072020 > Hmm I'm wondering whether arguments to the top level compute call, such as the chosen scheduler, would...
It appears that the more recent upgrades to dask-image's imread have broken the use case of reading multiple 3D tiffs. (Probably the problem is more general than that, but this...
Dear dask_image community, I am a new dask_image user. Maybe, due to my beginner level, I am doing something wrong, but I noticed that reading a collection of images using...
I think demo dataset infrastructure would be useful. I made a PR proposal for napari here: https://github.com/napari/napari/pull/3580 (it's based on scikit-image: they use [pooch](https://www.fatiando.org/pooch/latest/) and like it) We could have...
We have this try/except statement for imports here: https://github.com/dask/dask-image/blob/bbe73c64ec16781053858c0408e9ca6e4af6fb9d/dask_image/ndmeasure/_utils/__init__.py#L14-L17 According to John: > Yeah this was renamed in Dask 1.1.0 ( https://github.com/dask/dask/pull/4348 ). If we are comfortable making that a...
* dask-image version: 0.2.0 * Python version: 3.6.8 * Operating System: macOS 10.15.5 Beta ### Description Right now I have a standard 2-D image, stored as a dask array. It's...
Working on a modest-size cube, I found that `scipy.ndimage.sum` is ~100-300x faster than `dask_image.ndmeasure.sum_labels` ```python import numpy as np, scipy.ndimage blah = np.random.randn(19,512,512) msk = blah > 3 lab, ct...
If I would like to compute several of the [ndmeasures functions](https://dask-image.readthedocs.io/en/latest/dask_image.ndmeasure.html) over my image data (similar to `scikit-image's regionprops'), is there a way to do that, i.e. to save compute...
A few weeks ago @jakirkham, myself, and other NVIDIA folks with @tlambert03, @sofroniewn, and other napari/czi folks we chatted about having better support for deconvolve (with Richardson Lucy) within the...
This could be done in two stages: 1. Add support assuming that the number of coordinates is small and fits in worker memory. This is useful when grabbing a small...