Darek Kedra

icon indicating an email [email protected]

icon location Barcelona, Spain icon location bioinformatics/Linux NGS, Slurm, AWS, Singularity

Results 23 issues of Darek Kedra

md5 checksums for inputs

Hello, This is just an enhancement proposal, no rush to implement it. does it make sense to add md5 checksums in the VCF header for all files used in a...

benchmarks and speedups

8 comment

Hello, I have completed TSV to VCF transformation of one Finngen GWAS summary file as a test case. The gwas2vcf was run using Singularity container using: * finngen_R5_AB1_AMOEBIASIS.tsv (16380388 lines)...

enhancement

fq lint output

2 comment

Hi, I have used `fq lint` on a bunch of files piping the output to a one text file. Two issues: 1. if the given fastq file had some issue/didn't...