Output ".seg" file [Feature Request]

[ahwanpandey]

It would be great if the tool would output a ".seg" file that you can load into IGV. It's easy enough to parse the VCF but just some that that would be nice to have out of the box. If you agree, having a "--sample-id" parameter to use for the name in the ID column would be very convenient as well.

https://software.broadinstitute.org/software/igv/SEG

[dariober]

Thanks - I'll keep this in mind but for now I may leave it to the user to prepare the desired file for IGV.

[natalie-23-gill]

The format_igv_seg function in facets-suite might be an easy way to incorporate this