bioinformatics-cafe

bioinformatics-cafe copied to clipboard

Hi @dariober I was trying to findout the presence of G4's in the promoter sequences of my multifasta file 1. The expression you mentioned in the Readme.md file i.e. '([gG]{3,}\w{1,7}){3,}[gG]{3,}'...

Rohit-Satyam

Hi, Thank you for providing your useful tools. There is a minor issue with the documentation (output from `-h`) in the script `catInterleaveFastq.sh`: The usage instructions says ``` USAGE catInterleaveFastq.sh...

nylander

I'm confused about the ref.fa file? is this publicly available or something I should have with my data?

vverpl

fastaRegexFinder

2

Hi, Perhaps it's not an issue but my lack of understanding of the syntax, but I am not able to perform fuzzy regex seatch with your script. The syntax I...

bioinfo4321

``` xacct.py -v xacct.py 0.3.0 ``` Sort by MaxRSS gives: ``` xacct.py -s MaxRSS Traceback (most recent call last): File "/home/db291g/bin/xacct.py", line 341, in sacct_mrg= sorted(sacct_mrg, key=lambda k: k[s], reverse=...

dariober

Important TODO: tableCat.py needs to check that gzip exits clean!

dariober