danshu

Hi, I'm using MaSuRCA and there is a genome size estimation step using jellyfish: log Estimating genome size. jellyfish count -m 31 -t 30 -C -s $JF_SIZE -o k_u_hash_0 pe.cor.fa...

Meaning of associated contig identifiers

4

Hi, Here is the identifier of an associated contig: 000000F-016-01 My understanding is that: 000000F is the identifier of the corresponding primary contig; 016 means that this associated contig corresponds...

Falcon error

5

I'm running falcon and I have the following error message: ``` py [CRITICAL]Any exception caught in RefreshTargets() indicates an unrecoverable error. Shutting down... /FALCON-integrate/pypeFLOW/pypeflow/controller.py:537: UserWarning: "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" "! Please wait for...

How does bfc assign quality scores?

3

After error correction, I noticed that some quality scores are strange: ?????????????????????????????????????????????????????????????????????????????????????????????+????????+???????????+?????????????

Several issues

5

I have used orthofiller and have following issues: 1. "0.1. Checking installed programs" failed to test some shell commands I'm sure that I have these shell commands but this step...