Dan Warren
Dan Warren
We've had two different people add new tree distance metrics to two different branches - Martin Smith on the master branch for RWTY 1 and Michelle Kendall on Rob's branch...
Right now it's hard-coded at 2, but it's easy to make this stuff N-dimensional. May have downstream impacts on other plots, though, which we'll want to take a hard look...
Yes it's Christmas and yes I'm on holiday, but I just ran across this and wanted to make a note of it for when I get back to work. Check...
Something Rob brought up in conversation: it would be nice to have some way of comparing distributions of parameter estimates across chains to see whether they're significantly different.
May not be possible for all cases, but it shouldn't be too hard to at least attempt to detect which leading lines are comments and default to skipping those instead...
This is just a placeholder for notes etc. on the unit testing portion.
Apparently beast uses tabs in log files to separate columns, but allows spaces in tip names. This is causing people with beast output to have issues loading in log files....
At present that parameter list is only being used for the makeplot.pairs function, not for the traces of individual parameters. We should either switch makeplot.all.params to use the params argument...