Daniela Butano

Misleading message if property src.data.dir it's not properly configured in the project.xml file

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If in a obo source, we configure ` ` instead of ` ` the console prints out the message > Don't know how to deal with file null thrown [here](https://github.com/intermine/intermine/blob/dev/bio/core/src/main/java/org/intermine/bio/task/OboConverterTask.java#L110)...

A the moment there is not XML validation to the project.xml configuration file. For example the wrong XML here: ` ` leads to the misleading message > java.lang.IllegalArgumentException: class "org.intermine.model.bio.null"...

In the project.xml file, for bio-source gff, if you do no set the property name="gff3.seqClsName" you have this error message > Execution failed for task ':dbmodel:retrieveSingleSource'. > java.lang.IllegalArgumentException: class "org.intermine.model.bio.null"...

Integration with identifiers-widget

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see the project https://github.com/intermine/identifiers-widget

At the moment the default input it's in json (which doesn't work). It works with XML

This is the error ---- Error Found ---- java.lang.RuntimeException: Error retrieving the shared bags for the user : 6007978at org.intermine.api.bag.SharedBagManager.getSharedBags(SharedBagManager.java:196)at org.intermine.api.bag.BagManager.getBags(BagManager.java:393)at org.intermine.api.bag.BagManager.getCurrentBags(BagManager.java:410)at org.intermine.api.query.PathQueryExecutor.makeQuery(PathQueryExecutor.java:154)at org.intermine.api.query.PathQueryExecutor.execute(PathQueryExecutor.java:96)at org.intermine.web.fair.SemanticMarkupUtil.getDatSets(SemanticMarkupUtil.java:125)at org.intermine.web.fair.SemanticMarkupUtil.getDataCatalogMarkup(SemanticMarkupUtil.java:191)at org.intermine.web.struts.BeginAction.markupHomePage(BeginAction.java:244)at org.intermine.web.struts.BeginAction.execute(BeginAction.java:180)at org.apache.struts.action.RequestProcessor.processActionPerform(RequestProcessor.java:425)at org.apache.struts.action.RequestProcessor.process(RequestProcessor.java:228)at...

User1 creates a list with tag1. User2 creates a list with the same name. In the List->View page of the user2, the list will be displayed with the tag1. Solution:...

The property branding.images.logo contains an absolute path (eg. http://www.flymine.org/flymine/model/images/logo.png) When flymine moved to https schema we forgot to update that url. Maybe we should replace programmability the schema set in...

Instead of hard coding in the web.properties file the auth, token and identity-resource endpoints, use .well-known/openid-configuration endpoint which returns all the endpoints in a standard format.

We use the im:preferredBagType tag to put the classes on the top of the _Select to start query_ dropdown list in the querybuilder