plantcv
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danforthcenter
Plant phenotyping with image analysis
**Describe your changes** Update `pcv.report_size_marker` input parameters to take new roi formatted Object. **Type of update** Is this a: * update **Associated issues** #945 **Additional context** Add any other context...
**Is your feature request related to a problem? Please describe.** In PlantCV v4, `plantcv.parallel.job_builder` the `--names` flag for workflows is set based on the configuration option `group_name`. The `--names` option...
**Is your feature request related to a problem? Please describe.** The saved JSON files are unreadable by humans. **Describe the solution you'd like** An optional parameter in the save function...
Added new function analyze.distribution. Added documentation for analyze.distribution. **Describe your changes** This new function provides a spatial analysis of pixel distribution of a mask in the X and Y dimension....
**Describe your changes** Added logic to check for incorrect block_size values to pass to cv2.adaptiveThreshold inside detect_color_card. Throws a fatal_error if not odd or greater than 1. **Type of update**...
**Describe your changes** Removing mutable default arguments Balanced tuple unpacking from other Deepsource warning Added a test case to test_hyper_histogram.py **Type of update** Deepsource issues **For the reviewer** See [this...
**Is your feature request related to a problem? Please describe.** In root images from minirhizotrons, it's of interest to know the density of roots as a function of depth, but...
**Describe your changes** Changed list() generator to list comprehension in line 218 **Type of update** * Bug fix * Work in progress **Associated issues** Addresses unnecessary generator from issue PTC-W0015...
**Is your feature request related to a problem? Please describe.** Add Kmeans segmentation options - Integrate @JorgeGtz's seed analysis methods into functions **Additional context** Add any other context, sample data,...
Question about coverting outputs json to csv after following multi plant image processing tutorial
Good afternoon everyone, I followed the tutorial for multi plant image processing located at this link (https://plantcv.readthedocs.io/en/stable/tutorials/multi-plant_tutorial/) . At the end of the code, it runs analysis_image = pcv.analyze.size(img=rotate_img, labeled_mask=labeled_objects2,...
