plantcv
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danforthcenter
Plant phenotyping with image analysis
**Is your feature request related to a problem? Please describe.** It is either time intensive or imprecise to use the `pcv.roi.custom` function currently since you need to provide a list...
**Is your feature request related to a problem? Please describe.** @kmurphy61 described the issue well in #710. Currently, when no plant or object is detected, PlantCV will not output measurements,...
Add a helper function for making Xarray DataArrays for non-CropReporter data. Fdark QC analysis was also removed in #750 so the idea would be to have one function to help...
I guess i missed when this behavior changed 👎 There is no way to revert to the old behavior of not including subdirs when using cli args https://github.com/danforthcenter/plantcv/blob/c2ad63c868227bbead043e41b6b618811907dc93/plantcv/parallel/parsers.py#L168 I could...
**Describe the bug** The two observations of type tuple in the function analyze_object (center_of_mass and ellipse_center) don't get registered in the file resulting from process_results. The intermediary .json file does...
I discovered that snapshot images don't have unique filenames when creating #759. They are organized with subdirectories. This seems like a problem because the filename is used as the dict...
**Describe the bug** hi there, When I input a PNG type image (Gray, alpha channel=no, choose 'gray')in Analyze Thermal Values notebook, in Analysis step, the error happens: SystemError Traceback (most...
**Is your feature request related to a problem? Please describe.** For the project I am working on, one image is segmented into several instances, i.e. leaves. I am wondering do...
**Describe the bug** readbayer() is producing color images where the bands are out of order and image is rotated. I am actually getting a RGB image back (with bayertype 'BG')...
**Is your feature request related to a problem? Please describe.** When we calculate a metric like `(Fm - F0) / Fm`, there can be some quality control issues. One that...