lightning-pose
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danbider
TypeError: entry_points() got an unexpected keyword argument 'group'
Hello, I am trying to install lightning-pose as outlined here: https://lightning-pose.readthedocs.io/en/latest/source/installation.html
I've created a conda environment in Python 3.8, installed lightning_pose from git, ran python -c "import lightning_pose" successfully, installed the dependencies with a success message, but when I try pytest I get the following error:
sys.exit(console_main())
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 198, in console_main
code = main()
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 156, in main
config = _prepareconfig(args, plugins)
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 338, in _prepareconfig
config = pluginmanager.hook.pytest_cmdline_parse(
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_hooks.py", line 501, in __call__
return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult)
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_manager.py", line 119, in _hookexec
return self._inner_hookexec(hook_name, methods, kwargs, firstresult)
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_callers.py", line 138, in _multicall
raise exception.with_traceback(exception.__traceback__)
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_callers.py", line 121, in _multicall
teardown.throw(exception) # type: ignore[union-attr]
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/helpconfig.py", line 105, in pytest_cmdline_parse
config = yield
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_callers.py", line 102, in _multicall
res = hook_impl.function(*args)
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1096, in pytest_cmdline_parse
self.parse(args)
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1449, in parse
self._preparse(args, addopts=addopts)
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1326, in _preparse
self.pluginmanager.load_setuptools_entrypoints("pytest11")
File "/home/ubuntu/.local/lib/python3.8/site-packages/pluggy/_manager.py", line 414, in load_setuptools_entrypoints
plugin = ep.load()
File "/usr/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/usr/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 961, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/assertion/rewrite.py", line 178, in exec_module
exec(co, module.__dict__)
File "/home/ubuntu/.local/lib/python3.8/site-packages/torchtyping/__init__.py", line 11, in <module>
from .typechecker import patch_typeguard
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/assertion/rewrite.py", line 178, in exec_module
exec(co, module.__dict__)
File "/home/ubuntu/.local/lib/python3.8/site-packages/torchtyping/typechecker.py", line 4, in <module>
import typeguard
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "/home/ubuntu/.local/lib/python3.8/site-packages/_pytest/assertion/rewrite.py", line 178, in exec_module
exec(co, module.__dict__)
File "/home/ubuntu/.local/lib/python3.8/site-packages/typeguard/__init__.py", line 48, in <module>
load_plugins()
File "/home/ubuntu/.local/lib/python3.8/site-packages/typeguard/_checkers.py", line 874, in load_plugins
for ep in entry_points(group="typeguard.checker_lookup"):
TypeError: entry_points() got an unexpected keyword argument 'group'
Based on related issues 1, 2, 3, 4, it seems like there's some incompatibility with the version of importlib-metadata. I've tried manually installing several different versions and still get the same error. Can you recommend a particular version that is compatible?
After following all the directions on the lightning pose installation page (I'm on Ubuntu 20.04 so I skipped installing fiftyone-db-ubuntu2204), I get the following from conda list:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
attrs 23.2.0 pypi_0 pypi
blinker 1.7.0 pypi_0 pypi
bzip2 1.0.8 hd590300_5 conda-forge
ca-certificates 2024.2.2 hbcca054_0 conda-forge
certifi 2024.2.2 pypi_0 pypi
charset-normalizer 3.3.2 pypi_0 pypi
click 8.1.7 pypi_0 pypi
idna 3.6 pypi_0 pypi
importlib-metadata 7.1.0 pypi_0 pypi
jsonschema 4.21.1 pypi_0 pypi
jsonschema-specifications 2023.12.1 pypi_0 pypi
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 13.2.0 h807b86a_5 conda-forge
libgomp 13.2.0 h807b86a_5 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libsqlite 3.45.2 h2797004_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
lightning-pose 1.1.0 dev_0 <develop>
markdown 3.6 pypi_0 pypi
ncurses 6.4.20240210 h59595ed_0 conda-forge
nvidia-dali-cuda110 1.34.0 pypi_0 pypi
oauthlib 3.2.2 pypi_0 pypi
openssl 3.2.1 hd590300_1 conda-forge
pip 24.0 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pypi_0 pypi
pyasn1 0.5.1 pypi_0 pypi
pyasn1-modules 0.3.0 pypi_0 pypi
python 3.8.19 hd12c33a_0_cpython conda-forge
pyyaml 6.0.1 pypi_0 pypi
readline 8.2 h8228510_1 conda-forge
referencing 0.34.0 pypi_0 pypi
requests 2.31.0 pypi_0 pypi
rpds-py 0.18.0 pypi_0 pypi
setuptools 69.2.0 pyhd8ed1ab_0 conda-forge
six 1.16.0 pypi_0 pypi
tk 8.6.13 noxft_h4845f30_101 conda-forge
urllib3 1.26.18 pypi_0 pypi
wheel 0.42.0 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zipp 3.18.1 pypi_0 pypi
Thanks for any suggestions you have.
@arielah thanks for posting the issue. I have two working versions:
- Ubuntu 22.04,
importlib-metadataversion is7.0.1 - Ubuntu 20.04,
importlib-metadataversion is6.8.0
Maybe try downgrading to importlib-metadata to one of those versions?
Hi Matt, thanks for looking into this. I'm running Ubuntu 20.04, so I tried downgrading to 6.8.0 and got the same error: TypeError: entry_points() got an unexpected keyword argument 'group'
Same thing with 7.0.1. Not sure where to go from here. Here's my pip list output if that's helpful:
Package Version Editable project location
--------------------------- ----------- --------------------------------------------------
absl-py 2.1.0
aiofiles 23.2.1
aiohttp 3.9.3
aiosignal 1.3.1
altair 5.2.0
antlr4-python3-runtime 4.9.3
anyio 4.3.0
argcomplete 3.2.2
astunparse 1.6.3
async-timeout 4.0.3
attrs 23.2.0
backports.zoneinfo 0.2.1
beautifulsoup4 4.12.3
blinker 1.7.0
boto3 1.34.50
botocore 1.34.50
Brotli 1.1.0
cachetools 5.3.3
certifi 2024.2.2
charset-normalizer 3.3.2
click 8.1.7
contourpy 1.1.1
cycler 0.12.1
dacite 1.7.0
decorator 4.4.2
Deprecated 1.2.14
dill 0.3.8
dm-tree 0.1.8
dnspython 2.6.1
exceptiongroup 1.2.0
fiftyone 0.23.5
fiftyone-brain 0.16.1
fiftyone-db 1.1.1
fiftyone-db-ubuntu2204 0.4.0
filelock 3.13.1
fonttools 4.49.0
frozenlist 1.4.1
fsspec 2024.2.0
ftfy 6.1.3
future 1.0.0
gast 0.5.4
gitdb 4.0.11
GitPython 3.1.42
glob2 0.7
google-auth 2.28.1
google-auth-oauthlib 1.0.0
graphql-core 3.2.3
grpcio 1.62.0
h11 0.14.0
h2 4.1.0
h5py 3.10.0
hpack 4.0.0
httpcore 1.0.4
httpx 0.27.0
humanize 4.9.0
hydra-core 1.3.2
Hypercorn 0.16.0
hyperframe 6.0.1
idna 3.6
imageio 2.34.0
imageio-ffmpeg 0.4.9
imgaug 0.4.0
importlib-metadata 7.0.1
importlib_resources 6.1.2
inflate64 1.0.0
iniconfig 2.0.0
Jinja2 3.1.3
jmespath 1.0.1
joblib 1.3.2
jsonlines 4.0.0
jsonschema 4.21.1
jsonschema-specifications 2023.12.1
kaleido 0.2.1
kiwisolver 1.4.5
kornia 0.7.1
lazy_loader 0.3
lightning 2.2.0.post0
lightning-pose 1.1.0 /redacted/path/to/lightning-pose/
lightning-utilities 0.10.1
Markdown 3.6
markdown-it-py 3.0.0
MarkupSafe 2.1.5
matplotlib 3.7.5
mdurl 0.1.2
mongoengine 0.24.2
motor 3.3.2
moviepy 1.0.3
mpmath 1.3.0
multidict 6.0.5
multivolumefile 0.2.3
networkx 3.1
numpy 1.24.4
nvidia-cublas-cu12 12.1.3.1
nvidia-cuda-cupti-cu12 12.1.105
nvidia-cuda-nvrtc-cu12 12.1.105
nvidia-cuda-runtime-cu12 12.1.105
nvidia-cudnn-cu12 8.9.2.26
nvidia-cufft-cu12 11.0.2.54
nvidia-curand-cu12 10.3.2.106
nvidia-cusolver-cu12 11.4.5.107
nvidia-cusparse-cu12 12.1.0.106
nvidia-dali-cuda110 1.34.0
nvidia-dali-cuda120 1.35.0
nvidia-nccl-cu12 2.19.3
nvidia-nvjitlink-cu12 12.3.101
nvidia-nvtx-cu12 12.1.105
oauthlib 3.2.2
omegaconf 2.3.0
opencv-python 4.9.0.80
opencv-python-headless 4.9.0.80
packaging 23.2
pandas 2.0.3
pillow 10.2.0
pip 24.0
pkgutil_resolve_name 1.3.10
plotly 5.19.0
pluggy 1.4.0
pprintpp 0.4.0
priority 2.0.0
proglog 0.1.10
protobuf 4.25.3
psutil 5.9.8
py7zr 0.20.8
pyarrow 15.0.0
pyasn1 0.5.1
pyasn1-modules 0.3.0
pybcj 1.0.2
pycryptodomex 3.20.0
pydeck 0.8.1b0
Pygments 2.17.2
pymongo 4.6.2
pyparsing 3.1.1
pyppmd 1.1.0
pytest 8.0.2
python-dateutil 2.8.2
pytorch-lightning 2.2.0.post0
pytz 2024.1
PyWavelets 1.4.1
PyYAML 6.0.1
pyzstd 0.15.9
rarfile 4.1
referencing 0.34.0
regex 2023.12.25
requests 2.31.0
requests-oauthlib 1.3.1
retrying 1.3.4
rich 13.7.0
rpds-py 0.18.0
rsa 4.9
s3transfer 0.10.0
scikit-image 0.21.0
scikit-learn 1.3.2
scipy 1.10.1
seaborn 0.13.2
segment-anything 1.0
setuptools 69.2.0
shapely 2.0.3
six 1.16.0
smmap 5.0.1
sniffio 1.3.1
sortedcontainers 2.4.0
soupsieve 2.5
sse-starlette 0.10.3
sseclient-py 1.8.0
starlette 0.37.1
strawberry-graphql 0.138.1
streamlit 1.31.1
sympy 1.12
tabulate 0.9.0
taskgroup 0.0.0a4
tenacity 8.2.3
tensorboard 2.14.0
tensorboard-data-server 0.7.2
texttable 1.7.0
threadpoolctl 3.3.0
tifffile 2023.7.10
toml 0.10.2
tomli 2.0.1
toolz 0.12.1
torch 2.2.1
torchmetrics 1.3.1
torchtyping 0.1.4
torchvision 0.17.1
tornado 6.4
tqdm 4.66.2
triton 2.2.0
typeguard 4.1.5
typing 3.7.4.3
typing_extensions 4.10.0
tzdata 2024.1
tzlocal 5.2
universal-analytics-python3 1.1.1
urllib3 1.26.18
validators 0.22.0
voxel51-eta 0.12.5
watchdog 4.0.0
wcwidth 0.2.13
Werkzeug 3.0.1
wheel 0.42.0
wrapt 1.16.0
wsproto 1.2.0
xmltodict 0.13.0
yarl 1.9.4
zipp 3.18.1
Ah frustrating. I tried a fresh install on Ubuntu 20.04 by first installing all of your package versions, but I ran into some errors with unpacking wheels. So instead I made another fresh install of lightning pose on 20.04, and the pip list is below. One thing you could try is to convert the below into a requirements.txt file, and then (from inside the LP directory) do
pip install -r requirements.txt
pip install -e .
pytest
Then we can at least know if the difference is in the conda environment or some larger system difference.
absl-py 2.1.0
aiofiles 23.2.1
aiohttp 3.9.3
aiosignal 1.3.1
altair 5.2.0
annotated-types 0.6.0
antlr4-python3-runtime 4.9.3
anyio 4.3.0
argcomplete 3.2.3
argon2-cffi 23.1.0
argon2-cffi-bindings 21.2.0
arrow 1.3.0
asttokens 2.4.1
astunparse 1.6.3
async-lru 2.0.4
async-timeout 4.0.3
attrs 23.2.0
awscrt 0.19.19
Babel 2.14.0
backoff 2.2.1
beautifulsoup4 4.12.3
bleach 6.1.0
blinker 1.7.0
boto3 1.34.70
botocore 1.34.70
Brotli 1.1.0
cachetools 5.3.3
certifi 2024.2.2
cffi 1.16.0
charset-normalizer 3.3.2
click 8.1.7
comm 0.2.2
contourpy 1.2.0
cycler 0.12.1
dacite 1.7.0
debugpy 1.8.1
decorator 4.4.2
defusedxml 0.7.1
Deprecated 1.2.14
dill 0.3.8
dm-tree 0.1.8
dnspython 2.6.1
exceptiongroup 1.2.0
executing 2.0.1
fastapi 0.110.0
fastjsonschema 2.19.1
fiftyone 0.23.7
fiftyone-brain 0.16.1
fiftyone_db 1.1.2
filelock 3.13.3
fire 0.6.0
fonttools 4.50.0
fqdn 1.5.1
frozenlist 1.4.1
fsspec 2024.3.1
ftfy 6.2.0
future 1.0.0
gast 0.5.4
gitdb 4.0.11
GitPython 3.1.42
glob2 0.7
google-auth 2.29.0
google-auth-oauthlib 1.2.0
graphql-core 3.2.3
grpcio 1.62.1
h11 0.14.0
h2 4.1.0
h5py 3.10.0
hpack 4.0.0
httpcore 1.0.5
httpx 0.27.0
humanize 4.9.0
hydra-core 1.3.2
Hypercorn 0.16.0
hyperframe 6.0.1
idna 3.6
imageio 2.34.0
imageio-ffmpeg 0.4.9
imgaug 0.4.0
inflate64 1.0.0
iniconfig 2.0.0
ipykernel 6.26.0
ipython 8.17.2
ipywidgets 8.1.1
isoduration 20.11.0
jedi 0.19.1
Jinja2 3.1.3
jmespath 1.0.1
joblib 1.3.2
json5 0.9.24
jsonlines 4.0.0
jsonpointer 2.4
jsonschema 4.21.1
jsonschema-specifications 2023.12.1
jupyter_client 8.6.1
jupyter_core 5.7.2
jupyter-events 0.10.0
jupyter-lsp 2.2.4
jupyter_server 2.13.0
jupyter_server_terminals 0.5.3
jupyterlab 4.0.6
jupyterlab_pygments 0.3.0
jupyterlab_server 2.25.4
jupyterlab_widgets 3.0.10
kaleido 0.2.1
kiwisolver 1.4.5
kornia 0.7.2
kornia_rs 0.1.2
lazy_loader 0.3
lightning 2.2.1
lightning-cloud 0.5.64
lightning-pose 1.1.0 /teamspace/studios/this_studio/lightning-pose
lightning_sdk 0.1.2
lightning-utilities 0.10.1
litdata 0.2.2
Markdown 3.6
markdown-it-py 3.0.0
MarkupSafe 2.1.5
matplotlib 3.8.2
matplotlib-inline 0.1.6
mdurl 0.1.2
mistune 3.0.2
mongoengine 0.24.2
motor 3.4.0
moviepy 1.0.3
mpmath 1.3.0
multidict 6.0.5
multivolumefile 0.2.3
nbclient 0.10.0
nbconvert 7.16.3
nbformat 5.10.3
nest-asyncio 1.6.0
networkx 3.2.1
notebook_shim 0.2.4
numpy 1.26.2
nvidia-cublas-cu12 12.1.3.1
nvidia-cuda-cupti-cu12 12.1.105
nvidia-cuda-nvrtc-cu12 12.1.105
nvidia-cuda-runtime-cu12 12.1.105
nvidia-cudnn-cu12 8.9.2.26
nvidia-cufft-cu12 11.0.2.54
nvidia-curand-cu12 10.3.2.106
nvidia-cusolver-cu12 11.4.5.107
nvidia-cusparse-cu12 12.1.0.106
nvidia-dali-cuda120 1.36.0
nvidia-nccl-cu12 2.19.3
nvidia-nvimgcodec-cu12 0.2.0.7
nvidia-nvjitlink-cu12 12.4.99
nvidia-nvtx-cu12 12.1.105
oauthlib 3.2.2
objprint 0.2.3
omegaconf 2.3.0
opencv-python 4.9.0.80
opencv-python-headless 4.9.0.80
overrides 7.7.0
packaging 23.2
pandas 2.1.4
pandocfilters 1.5.1
parso 0.8.3
pexpect 4.9.0
pillow 10.2.0
pip 24.0
platformdirs 4.2.0
plotly 5.20.0
pluggy 1.4.0
pprintpp 0.4.0
priority 2.0.0
proglog 0.1.10
prometheus_client 0.20.0
prompt-toolkit 3.0.43
protobuf 4.23.4
psutil 5.9.8
ptyprocess 0.7.0
pure-eval 0.2.2
py7zr 0.21.0
pyarrow 15.0.2
pyasn1 0.5.1
pyasn1-modules 0.3.0
pybcj 1.0.2
pycparser 2.21
pycryptodomex 3.20.0
pydantic 2.6.4
pydantic_core 2.16.3
pydeck 0.8.1b0
Pygments 2.17.2
PyJWT 2.8.0
pymongo 4.6.3
pyparsing 3.1.2
pyppmd 1.1.0
pytest 8.1.1
python-dateutil 2.9.0.post0
python-json-logger 2.0.7
python-multipart 0.0.9
pytorch-lightning 2.2.1
pytz 2024.1
PyYAML 6.0.1
pyzmq 25.1.2
pyzstd 0.15.10
rarfile 4.1
referencing 0.34.0
regex 2023.12.25
requests 2.31.0
requests-oauthlib 2.0.0
retrying 1.3.4
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
rich 13.7.1
rpds-py 0.18.0
rsa 4.9
s3transfer 0.10.1
scikit-image 0.22.0
scikit-learn 1.3.2
scipy 1.11.4
seaborn 0.13.2
segment-anything 1.0
Send2Trash 1.8.2
setuptools 68.2.2
shapely 2.0.3
simple-term-menu 1.6.4
six 1.16.0
smmap 5.0.1
sniffio 1.3.1
sortedcontainers 2.4.0
soupsieve 2.5
sse-starlette 0.10.3
sseclient-py 1.8.0
stack-data 0.6.3
starlette 0.36.3
strawberry-graphql 0.138.1
streamlit 1.32.2
sympy 1.12
tabulate 0.9.0
taskgroup 0.0.0a4
tenacity 8.2.3
tensorboard 2.15.1
tensorboard-data-server 0.7.2
termcolor 2.4.0
terminado 0.18.1
texttable 1.7.0
threadpoolctl 3.4.0
tifffile 2024.2.12
tinycss2 1.2.1
toml 0.10.2
tomli 2.0.1
toolz 0.12.1
torch 2.2.1
torchaudio 2.2.1
torchmetrics 1.3.1
torchtyping 0.1.4
torchvision 0.17.1
tornado 6.4
tqdm 4.66.2
traitlets 5.14.2
triton 2.2.0
typeguard 4.2.1
types-python-dateutil 2.9.0.20240316
typing 3.7.4.3
typing_extensions 4.10.0
tzdata 2024.1
tzlocal 5.2
universal-analytics-python3 1.1.1
uri-template 1.3.0
urllib3 2.2.1
uvicorn 0.29.0
viztracer 0.16.2
voxel51-eta 0.12.6
watchdog 4.0.0
wcwidth 0.2.13
webcolors 1.13
webencodings 0.5.1
websocket-client 1.7.0
Werkzeug 3.0.1
wheel 0.41.2
widgetsnbextension 4.0.10
wrapt 1.16.0
wsproto 1.2.0
xmltodict 0.13.0
yarl 1.9.4
Thanks for your help, Matt. I made a fresh python 3.8 conda environment and ran pip install requirements.txt with the versions you provided. I got the following error:
Requirement already satisfied: aiofiles==23.2.1 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (23.2.1)
Requirement already satisfied: aiohttp==3.9.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (3.9.3)
Requirement already satisfied: aiosignal==1.3.1 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (1.3.1)
Requirement already satisfied: altair==5.2.0 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 5)) (5.2.0)
Collecting annotated-types==0.6.0 (from -r requirements.txt (line 6))
Downloading annotated_types-0.6.0-py3-none-any.whl.metadata (12 kB)
Requirement already satisfied: antlr4-python3-runtime==4.9.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 7)) (4.9.3)
Requirement already satisfied: anyio==4.3.0 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 8)) (4.3.0)
Collecting argcomplete==3.2.3 (from -r requirements.txt (line 9))
Using cached argcomplete-3.2.3-py3-none-any.whl.metadata (16 kB)
Collecting argon2-cffi==23.1.0 (from -r requirements.txt (line 10))
Downloading argon2_cffi-23.1.0-py3-none-any.whl.metadata (5.2 kB)
Collecting argon2-cffi-bindings==21.2.0 (from -r requirements.txt (line 11))
Downloading argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.7 kB)
Collecting arrow==1.3.0 (from -r requirements.txt (line 12))
Downloading arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB)
Collecting asttokens==2.4.1 (from -r requirements.txt (line 13))
Downloading asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Requirement already satisfied: astunparse==1.6.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 14)) (1.6.3)
Collecting async-lru==2.0.4 (from -r requirements.txt (line 15))
Downloading async_lru-2.0.4-py3-none-any.whl.metadata (4.5 kB)
Requirement already satisfied: async-timeout==4.0.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 16)) (4.0.3)
Collecting attrs==23.2.0 (from -r requirements.txt (line 17))
Using cached attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB)
Collecting awscrt==0.19.19 (from -r requirements.txt (line 18))
Downloading awscrt-0.19.19-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB)
Collecting Babel==2.14.0 (from -r requirements.txt (line 19))
Using cached Babel-2.14.0-py3-none-any.whl.metadata (1.6 kB)
Collecting backoff==2.2.1 (from -r requirements.txt (line 20))
Downloading backoff-2.2.1-py3-none-any.whl.metadata (14 kB)
Requirement already satisfied: beautifulsoup4==4.12.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 21)) (4.12.3)
Collecting bleach==6.1.0 (from -r requirements.txt (line 22))
Downloading bleach-6.1.0-py3-none-any.whl.metadata (30 kB)
Collecting blinker==1.7.0 (from -r requirements.txt (line 23))
Using cached blinker-1.7.0-py3-none-any.whl.metadata (1.9 kB)
Collecting boto3==1.34.70 (from -r requirements.txt (line 24))
Downloading boto3-1.34.70-py3-none-any.whl.metadata (6.6 kB)
Collecting botocore==1.34.70 (from -r requirements.txt (line 25))
Downloading botocore-1.34.70-py3-none-any.whl.metadata (5.7 kB)
Requirement already satisfied: Brotli==1.1.0 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 26)) (1.1.0)
Requirement already satisfied: cachetools==5.3.3 in /home/ubuntu/.local/lib/python3.8/site-packages (from -r requirements.txt (line 27)) (5.3.3)
Collecting certifi==2024.2.2 (from -r requirements.txt (line 28))
Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Collecting cffi==1.16.0 (from -r requirements.txt (line 29))
Downloading cffi-1.16.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer==3.3.2 (from -r requirements.txt (line 30))
Using cached charset_normalizer-3.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting click==8.1.7 (from -r requirements.txt (line 31))
Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting comm==0.2.2 (from -r requirements.txt (line 32))
Downloading comm-0.2.2-py3-none-any.whl.metadata (3.7 kB)
ERROR: Ignored the following versions that require a different python version: 1.2.0 Requires-Python >=3.9; 1.2.1rc1 Requires-Python >=3.9
ERROR: Could not find a version that satisfies the requirement contourpy==1.2.0 (from versions: 0.0.1, 0.0.2, 0.0.3, 0.0.4, 0.0.5, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.1.0, 1.1.1rc1, 1.1.1)
ERROR: No matching distribution found for contourpy==1.2.0
Ugh so sorry this is a headache. Try a conda environment with python 3.10 instead of 3.8, that seems to be why it's complaining (I'm using python 3.10 in the ubuntu 20.04 version, apologies for not checking that, didn't think it would matter)
Hi Matt, sorry this is a headache for the both of us. I'll write out what I did exactly.
conda create --name testpython310 python=3.10
conda activate testpython310
git clone https://github.com/danbider/lightning-pose.git
cd lightning-pose/
pip install -r requirements.txt (made from your message 5 days ago)
pip install -e .
pytest
And still got the "TypeError: entry_points() got an unexpected keyword argument 'group'" error. If I'm getting errors on pytest, but I don't get any errors when I run 'python -c "import lightning_pose"', should I just stop worrying about it, or is it likely to give me errors down the line?
that's so frustrating. yeah maybe it's best if you try fitting a model on the example data and see if anything complains: https://lightning-pose.readthedocs.io/en/latest/source/user_guide/training.html#train-with-example-data
Running scripts/train_hydra.py on Python 3.1 worked without any errors. I'll get to work on trying it on my data, sorry if that was a lot of worrying over nothing!
Glad to hear. I'll close this issue for now, but feel free to open another issue if you run into something else!