Dominik Schindler

Do we need to improve the Sankey diagrams further?

I have a local version that adds colour to the flow arrows in the Sankey diagram. Should I make a new PR for that?

It would be good to have the option to include labels for Markov scale (x-axis) and community indices in the plot.

Hello @MatteoSerafino, our current implementation of linearized Markov Stability is aimed for undirected graphs. It can be extended to directed graphs though and we will try and implement a "linearized...

Ok, I see. If we use Google teleportation, we necessarily obtain a dense matrix and this leads to memory issues in large graphs. So probably we should turn off teleportation...

Could you try again now? I set alpha=1 as default. It means that the constructor only works for strongly connected graphs.

Hello @MatteoSerafino, great to hear it's running now. Yes, I had to use scipy.sparse consistently to make it work. It would be great if you could let us know whether...

Great to hear! If this is an issue with the optimal scale selection, please try to change the parameters for scale selection, e.g. change kernel size or window size. ```...

With $\alpha=1$, I don't think it will work properly on a graph that is weakly connected because then the associated random walk is not ergodic anymore but might get stuck...

@arnaudon , I actually don't think it is theoretically possible to use $\alpha