d-j-e

Which version of rubra did you install?

Can you send me your config file via davidje@student(dot)unimelb(dot)edu(dot)au ?

This will be revisited after release of the pipeline

Possible to do, but a fair bit of work for rare case - and 'cut and paste' from a text file isn't that hard... To make it easier to read,...

Thought I'd removed that problem - oh well... open the config file and delete the following from near the top - there are characters in their that upset python... ```'no_check'...

WHat version of rubra did you download, and what cluster system are you using?

Try the version in the branch named 'Slurm' - think this is the problem.

Yes - the other version is for a qsub (torque) system, not SLurm

If you check the log folder, there are standard out and error files for each job - can you check to see if there is a particular error message from...

the srun command sets the output files for for standard out (stdout) and standard error (stderr) with the following... --error=log/makeDir.%j.stderr --output=log/makeDir.%j.stdout so is there anything reported in either of those...