Daniel Cameron

Percent encoding is under-defined

4

The intent of the percent encoding was to ensure that reserved characters can be presented in strings in their fields they are reserved. The spec lists a set of characters...

Clarified INFO END deprecation status

1

Addresses concerns raised in #784

HQ is underdefined

2

`HQ (Integer): Haplotype qualities, two comma separated phred qualities` The field, although being part of the example at the start of the document is underdefined. - What is the 'haplotype'...

GL genotype ordering does not account for phasing

1

GL genotype ordering defines genotypes on the a lower triangular matrix of possible alleles, order by GT ordinal. This is problematic for scenarios where phased GL is calculated as part...